Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq439 113 6e-20 seq52 111 2e-19 seq99 91.5 2e-13 seq57 91.5 2e-13 seq14 84.2 3e-11 >seq439 Length=218577 Score = 113 bits (124), Expect = 6e-20 Identities = 277/418 (66%), Gaps = 4/418 (1%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||||| || |||| || | |||||||| | | ||||| Sbjct 171221 TCAAGAATGTCTGCCCTGTTAGTTGCTGCAACGACAATGATGCCAGTATTACCCTCAAAA 171162 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || || | || |||| || |||||||| ||||||||| || | Sbjct 171161 CCATCCATTTCTGTCAGAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCTCCGCCA 171102 Query 11603 CCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 |||| | | |||| | ||||| |||||||| ||||| | || ||||| || || Sbjct 171101 ATTCCAGTTCCTCTTTGCCTTCCCACAGCATCAATTTCATCCACAAATACAATGCAAGGA 171042 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 || || ||| | | |||||||| || || | |||||| |||||||||||| Sbjct 171041 GCGTTCTCTTTGGCCTTCTTGAAGAGATCCCGGACTCGAGAGGCACCAACACCAACAAAC 170982 Query 11723 ATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCGCGA 11780 ||||| ||||| | | | || | || || || || ||| | |||||| || | Sbjct 170981 ATCTCAACAAACTCCGAACCTGA--AATGGAGAAAAACGGAACACCCGCTTCACCAGCAA 170924 Query 11781 TGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGG 11840 | || ||| || || ||||| || |||||||| || | ||||| | ||| | Sbjct 170923 TTGCCTTGGCCAGAAGAGTCTTCCCAGTACCTGGAGGTCCAACAAGAAGAACACCTTTCG 170864 Query 11841 GGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTC 11898 | || || || | || ||||||| || | ||||||||| ||||| | ||| Sbjct 170863 GAATGCGAGCCCCTACTGCAGTGAATCTCTCAGGCTTCTTGAGAAACTCCACTACCTC 170806 >seq52 Length=1412070 Score = 111 bits (122), Expect = 2e-19 Identities = 279/421 (66%), Gaps = 10/421 (2%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 || || || ||| | | ||||| ||||||||||| | |||||||| | | || || Sbjct 1010464 TCGAGAATGTCCGCCCTGTTAGTTGCCGCAATAACAATGATGCCAGTATTACCCTCGAAA 1010405 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || || | || || | ||| || ||||| ||||| ||| || | Sbjct 1010404 CCATCCATTTCTGTCAGAAGCTGGTTTAGTGTCTGCTCTCTTTCATCGTTTCCTCC---A 1010348 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| || | | | |||| | ||||| |||||||| ||||| | || ||||| || Sbjct 1010347 CCAATTCCTGTTCCTCTTTGCCTTCCCACAGCATCAATTTCATCCACAAATACAATGCAA 1010288 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || ||| || ||| | | |||||||| || || | |||||| ||||||||| Sbjct 1010287 GGAGCATTCTCTTTGGCCTTCTTGAAGAGATCCCGGACTCGAGAGGCACCAACACCAACA 1010228 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCG 11777 |||||||| ||||| | | | || | || || || || ||| | |||||| | Sbjct 1010227 AACATCTCAACAAACTCCGAACCTGA--AATGGAGAAAAACGGAACACCCGCTTCACCAG 1010170 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 | || || ||| || || || || || |||||||| || | ||||| | ||| Sbjct 1010169 CAATTGCCTTGGCCAGAAGAGTTTTCCCAGTACCTGGAGGCCCAACAAGAAGAACACCTT 1010110 Query 11838 GGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCT 11897 || || || || | || ||||||| || | ||||||||| ||||| | || Sbjct 1010109 TTGGAATGCGAGCCCCTACTGCAGTGAATCTCTCAGGCTTCTTGAGAAACTCCACTACCT 1010050 Query 11898 C 11898 | Sbjct 1010049 C 1010049 >seq99 Length=845567 Score = 91.5 bits (100), Expect = 2e-13 Identities = 191/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| ||||| | || |||||||| || || |||||||| ||||| | Sbjct 697370 AAACCCATCCATTTCGGTCAACAACTGATTAATAGTCTGCTCTCTCTCGTCATTCCCA-- 697427 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | ||||| | | ||| | || || ||||||||||||||||| || ||||| Sbjct 697428 CCTCCAAGTCCAGCCCCTCTCTGCCTCCCAACTGCATCAATCTCATCAATAAACACAATG 697487 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || || ||| | ||| | || || | ||| | || || || || || || Sbjct 697488 CA-GGGTGCTTTCGACTTGGCTTTCTCGAACAAATCTCTCACTCTCGACGCTCCAACTCC 697546 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 |||||||||||| ||||| | | ||| | ||| | ||| || || || || || Sbjct 697547 AACAAACATCTCAACAAACTCCGAGGCTGCGCATGAAAAGAACGGCACCCCTGCCTCTCC 697606 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGC 11815 ||| | |||| || | | |||||||| || |||||| Sbjct 697607 CGCCACAGCTCTAGCCAACAATGTCTTTCCAGTCCCTGGC 697646 >seq57 Length=1296831 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/218 (70%), Gaps = 14/218 (6%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | || |||||||| || || |||||||||||||| | Sbjct 699761 AAATCCATCCATTTCAGTCAACAACTGATTAATAGTCTGCTCTCTCTCATCATT--CCCC 699818 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | ||||| | | ||| | || ||||||||||| |||||||| |||||||| Sbjct 699819 CCTCCTAGTCCAGCCCCTCTCTGCCTCCCAACCGCATCAATTTCATCAATAAAGACAATG 699878 Query 11657 CATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCA 11711 || || |||| ||| || | ||||| | ||| | || ||| || || | Sbjct 699879 CAGGGCGCTTTTGACTTT-----GCTTTCTCAAACAAATCTCTCACTCTTGACGCCCCGA 699933 Query 11712 CACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCAC 11749 | |||||||||| ||| ||||| | | ||| | |||| Sbjct 699934 CTCCAACAAACAACTCAACAAACTCCGAGGCTGCGCAC 699971 >seq14 Length=2767599 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || ||||||||||| ||||||||||| ||||| || | || ||| ||||| | || Sbjct 700765 TGAGGTCTTGGTGTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCATCGCTGA 700824 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 |||||| | ||| || | | | |||||||| || || ||| || || | || Sbjct 700825 GACATCAAATGGTACGTTTTGATAGCTGAATCAATATCATCTTTGTGAATTCCAACAGCA 700884 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA- 112119 |||| ||| | ||||| ||| || |||||| | | || | || | | || || Sbjct 700885 ACCCTCATCAGCATGTGCTGAGGCCTTTCCACAACCTTTCCTTGGACCTTCAGGAGGTAG 700944 Query 112120 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 112167 | |||| ||||| || |||| ||||||||| || | ||| ||||||| Sbjct 700945 GATCTT-TCAAGCGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCG 700991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627956518404000