Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq439 91.5 2e-13 seq6087 87.8 2e-12 >seq439 Length=218577 Score = 91.5 bits (100), Expect = 2e-13 Identities = 246/369 (67%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| || ||||| | | | ||| |||||| || || | ||| || || || Sbjct 171252 ATCAAACCGTCCTGGCCTCAACAAGGCAGAGTCAAGAATGTCTGCCCTGTTAGTTGCTGC 171193 Query 14125 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 14184 | ||||| |||||| || | ||||| |||||||| || |||| || || || | Sbjct 171192 AACGACAATGATGCCAGTATTACCCTCAAAACCATCCATTTCTGTCAGAAGCTGGTTAAG 171133 Query 14185 GGTTTGTTCGCGTTCATCATT--CGCAGGCA-TACCACCCGCACTGCGTTGCTTACCGAC 14241 ||| ||||| | ||||||||| | | | || | ||| | || |||| | || || Sbjct 171132 GGTCTGTTCTCTTTCATCATTTCCTCCGCCAATTCCAGTTCCTCT---TTGCCTTCCCAC 171076 Query 14242 GGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCA--AAG 14299 || ||||||||||| | || || || || || || || ||| |||| ||| Sbjct 171075 AGCATCAATTTCATCCACAAATACAATGCAAGGAGCGTTCTCTTTGGC--CTTCTTGAAG 171018 Query 14300 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 14359 | ||| || |||| |||||| ||||| ||||||||||| ||||| | | | ||| Sbjct 171017 AGATCCCGGACTCGAGAGGCACCAACACCAACAAACATCTCAACAAACTCCGAACCTGAA 170958 Query 14360 CATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 14418 || | || || || || | |||||| || || || ||| || || |||||||| Sbjct 170957 -ATGGAGAAAAACGGAACACCCGCTTCACCAGCAATTGCCTTGGCCAGAAGAGTCTTCCC 170899 Query 14419 CGTCCCTGG 14427 || ||||| Sbjct 170898 AGTACCTGG 170890 >seq6087 Length=2767 Score = 87.8 bits (96), Expect = 2e-12 Identities = 261/395 (66%), Gaps = 6/395 (2%) Strand=Plus/Plus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCA 14209 |||||||| |||||||| || || || || | || || ||||| || ||||| || Sbjct 1604 TCAAAGCCGTCCATCTCGACCAGCAGCTGGTTCAGCGTCTGCTCGCGCTCGTCATT-GCC 1662 Query 14210 GGCATACC-ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 14268 | | | ||| || | ||| || |||||||||||| ||||| |||||||| | ||| Sbjct 1663 GCCGCCCAGACCGGCGCCGCGATGACGACCGACGGCGTCGATTTCGTCGATGAAGATGAT 1722 Query 14269 ACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || ||| | ||| ||| || || || ||||| | |||| ||||| || Sbjct 1723 GCAGGGCGCATTCTTCTTGGCCTGTTCGAACATGTCGCGCACGCGGCTGGCGCCGACGCC 1782 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCAC 14387 || ||||| || ||||| | | | | | || | || |||||| ||| | ||||| Sbjct 1783 GACGAACATTTCGACAAAGTCCGAACCCG-AGATCGAGAAGAAGGGCACGCCCGCTTCAC 1841 Query 14388 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCAC 14447 |||| | || || || || || ||||| || || || || || | || ||||| | Sbjct 1842 CCGCAACCGCGCGCGCCAGCAGCGTCTTGCCGGTGCCGGGAGGGCCGACCAGCAGGGCGC 1901 Query 14448 CACGTGGGATCCTGGCACCACTGCCAAAGTAGCGT-TCAGGTTGTTTAAGGAAGTCCACG 14506 | |||||| || | || | | | | | | | | || | || |||||||| ||| Sbjct 1902 CCTTGGGGATCTTGCCGCC-CAGACGCTGGAACTTGCCCGGGTCCTTCAGGAAGTCGACG 1960 Query 14507 ATTTCTTCCAATTCATCCTTCGCGGCGTCGATGCC 14541 | || | || ||| ||||| || |||| | ||| Sbjct 1961 ACCTCCTGCAGTTCGTCCTTGGCTTCGTCCACGCC 1995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618360871819400