Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq439 147 3e-30 seq52 129 7e-25 >seq439 Length=218577 Score = 147 bits (162), Expect = 3e-30 Identities = 283/413 (69%), Gaps = 6/413 (1%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | || || || || | ||||| || || || | | |||||| Sbjct 171221 TCAAGAATGTCTGCCCTGTTAGTTGCTGCAACGACAATGATGCCAGTATTACCCTCAAAA 171162 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| ||||||| ||| ||||||| || ||||| | ||||||||| || | Sbjct 171161 CCATCCATTTCTGTCAGAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCTCCGCCA 171102 Query 9677 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT 9736 |||| | | |||| ||||||| |||||||| ||||| | || || ||||| || Sbjct 171101 ATTCCAGTTCCTCTTTGCCTTCCCACAGCATCAATTTCATCCACAAATACAATGCAAGGA 171042 Query 9737 TGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAA 9794 || || || |||| ||||||||||| || || ||| || |||||||||| Sbjct 171041 GCGTTCTCTTTGGC--CTTCTTGAAGAGATCCCGGACTCGAGAGGCACCAACACCAACAA 170984 Query 9795 ACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCA 9853 ||||||| ||||| | | | ||| || | || || || ||| | |||||| ||| Sbjct 170983 ACATCTCAACAAACTCCGAACCTGAA-ATGGAGAAAAACGGAACACCCGCTTCACCAGCA 170925 Query 9854 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT 9913 || || ||| ||||||||||| || |||||||| || | || || ||||| Sbjct 170924 ATTGCCTTGGCCAGAAGAGTCTTCCCAGTACCTGGAGGTCCAACAAGAAGAACACCTTTC 170865 Query 9914 GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 ||||| || || | || | |||||||||| | ||| ||||| ||||| Sbjct 170864 GGAATGCGAGCCCCTACTGCAGTGAATCTCTCAGGCTTCTTGAGAAACTCCAC 170812 >seq52 Length=1412070 Score = 129 bits (142), Expect = 7e-25 Identities = 271/398 (68%), Gaps = 12/398 (3%) Strand=Plus/Minus Query 9575 TTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9634 || || || || || |||| || || || | | || ||||||||||| ||||||| | Sbjct 1010446 TTAGTTGCCGCAATAACAATGATGCCAGTATTACCCTCGAAACCATCCATTTCTGTCAGA 1010387 Query 9635 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGT 9691 || ||||| | || || || | |||||| || || |||| || | | | | Sbjct 1010386 AGCTGGTTTAGTGTCTGCTCTCTTTCATCGTTTCCTCC---ACCAATTCCTGTTCCTCTT 1010330 Query 9692 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 9751 ||| ||||||| |||||||| ||||| | || || ||||| || ||| || || Sbjct 1010329 TGCCTTCCCACAGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGC- 1010271 Query 9752 ACTTCA--AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGT 9809 |||| ||||||||||| || || ||| || ||||||||||||||||| ||||| | Sbjct 1010270 -CTTCTTGAAGAGATCCCGGACTCGAGAGGCACCAACACCAACAAACATCTCAACAAACT 1010212 Query 9810 TTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGA 9868 | | ||| || | || || || ||| | |||||| ||||| || ||| ||| Sbjct 1010211 CCGAACCTGAA-ATGGAGAAAAACGGAACACCCGCTTCACCAGCAATTGCCTTGGCCAGA 1010153 Query 9869 AGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928 ||||| || || |||||||| || | || || ||||| |||||| || || Sbjct 1010152 AGAGTTTTCCCAGTACCTGGAGGCCCAACAAGAAGAACACCTTTTGGAATGCGAGCCCCT 1010093 Query 9929 CTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 | || | |||||||||| | ||| ||||| ||||| Sbjct 1010092 ACTGCAGTGAATCTCTCAGGCTTCTTGAGAAACTCCAC 1010055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583190699342600