Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq549 132 5e-26 seq435 120 3e-22 >seq549 Length=172529 Score = 132 bits (146), Expect = 5e-26 Identities = 315/466 (68%), Gaps = 14/466 (3%) Strand=Plus/Plus Query 59661 TGGGACAAGCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCG 59720 ||||| || || | | ||||||| |||| |||||| ||||| ||||||||||| Sbjct 30369 TGGGAAAACCTGACTCCCGACGAGAAGCACTTCATCTCTCATGTCCTTGCCTTCTTCGCC 30428 Query 59721 GCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTTTCC--AAGGATGTCCAGA 59778 || |||||| ||||| | |||||| | | | | | |||| || || ||||| Sbjct 30429 GCCTCTGATGGGATTGTCCTCGAAAATCTCGCCGGG--CGTTTCATGAAAGAGGTCCAAG 30486 Query 59779 TTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAG 59837 | | ||||| || | || |||| | ||| ||| | ||| ||||||||||||| Sbjct 30487 TCTCGGAGGCGCGTGCTTTTTACGGATTCCAGATCGCG-ATTGAGAATATCCACTCCGAG 30545 Query 59838 ACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTC 59897 | |||| || || | || | | |||||||| | || |||||| | | ||||| Sbjct 30546 ATGTACAGTCTTCTGTTGGAGACTTATATCAAGGATTCTGAGGAGAAGAATCGCCTGTTT 30605 Query 59898 CGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT 59956 | ||| || || ||| | || || || | || ||| |||||| ||| |||||| Sbjct 30606 CATGCTATCGAAACGGTGCCGTGC-GTGGCTAAGAAGGCACGGTGGGCCTTGCGGTGGAT 30664 Query 59957 -GAGTCCTGGAGCATCATTTGCAC--AACGTCTCATAGCTTTTGCATGCGTGGAAGGAAT 60013 || | ||||| | || | | || | || | |||||||| ||||||||||| || Sbjct 30665 TGA---CGGGAGCGAGAGTTTCGCGGAAAGGCTAGTTGCTTTTGCTTGCGTGGAAGGGAT 30721 Query 60014 CTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGG 60073 || ||||| || || ||||| || || ||| | ||||||||||| | |||||||| Sbjct 30722 ATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGTTAAAAAAGCGTGGGTTGATGCCGGG 30781 Query 60074 CCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCAT 60119 || | || || |||||| |||| || || || || || || ||| Sbjct 30782 GCTAACCTTTTCGAACGAGTTGATCTCGCGAGATGAAGGGCTTCAT 30827 >seq435 Length=220439 Score = 120 bits (132), Expect = 3e-22 Identities = 286/423 (68%), Gaps = 12/423 (3%) Strand=Plus/Minus Query 59703 GTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACATGAACTTT 59762 ||||| ||||||||||| || ||||||||| || | || ||||| | | | | || Sbjct 105059 GTCCTTGCCTTCTTCGCTGCCTCTGATGGAATCGTCCTCGAGAATATCGCCGGG--CGTT 105002 Query 59763 TCC--AAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAAC 59819 || || || ||||| | | ||||| || | ||||||| || ||| ||| | Sbjct 105001 TCATGAAAGAAGTCCAAGTCTCGGAGGCGCGTGCTTTCTACGGGTTCCAGATCGCG-ATT 104943 Query 59820 GAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAA 59879 ||| ||||||||| |||| |||| || || | || | | |||||||| | Sbjct 104942 GAGAATATCCACTCGGAGATGTACAGTCTTTTGTTGGAGACCTACATCAAGGATTCTACT 104883 Query 59880 GAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAA 59939 |||||| ||||||| | |||||| |||||| || || | || || || Sbjct 104882 GAGAAGAACCGTCTGTTTCATGCCATTGAGACGGTGCCGTGTGTGGCTAAGAAGGCGGAG 104823 Query 59940 TGGGCCATGCAGTGGATGAGTCCTGGAG-CATCA--TTTGCACAACGTCTCATAGCTTTT 59996 ||||| | | |||||| || | |||| | | ||||| | | | || || ||| Sbjct 104822 TGGGCTTTACGGTGGAT-AGAC--GGAGGCGAGAGTTTTGCGGAGAGGTTAATCGCATTT 104766 Query 59997 GCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAG 60056 || ||||||||||| || || ||||| || || ||||| || || ||||| ||||| Sbjct 104765 GCTTGCGTGGAAGGGATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGCTAAAAAAA 104706 Query 60057 CGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTC 60116 ||||| || ||||| ||||||| ||||| |||||| |||| || || || || || || Sbjct 104705 CGTGGGCTAATGCCAGGCCTGACCTTCTCGAACGAGTTGATCTCGCGAGATGAAGGGCTT 104646 Query 60117 CAT 60119 ||| Sbjct 104645 CAT 104643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548458874175600