Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_028834.1 Length=48216 Score E Sequences producing significant alignments: (Bits) Value seq2307 87.8 6e-13 seq218 80.6 8e-11 >seq2307 Length=25250 Score = 87.8 bits (96), Expect = 6e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 36268 TTGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCC 36327 |||||||| | ||||||||||||| ||||||||| ||||||| |||||||||| || Sbjct 15945 TTGGTCGGGGCGAGAGGATTCGAACCTCCGACCCTCTGGTCCCAAACCAGATGCGCTACC 16004 Query 36328 AGACTGCGCTACACTCCG 36345 || ||||||||||| ||| Sbjct 16005 AGGCTGCGCTACACCCCG 16022 >seq218 Length=447883 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 36282 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTG-CCAGACTGCGCTACA 36340 |||||||||||||| | ||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 92363 AGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 92304 Query 36341 C 36341 | Sbjct 92303 C 92303 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 36282 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTG-CCAGACTGCGCTACA 36340 |||||||||||||| | ||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 140831 AGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 140772 Query 36341 C 36341 | Sbjct 140771 C 140771 Score = 80.6 bits (88), Expect = 8e-11 Identities = 55/61 (90%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 36282 AGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTG-CCAGACTGCGCTACA 36340 |||||||||||||| | ||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 366426 AGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTACA 366367 Query 36341 C 36341 | Sbjct 366366 C 366366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154151997204140