Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq78 96.9 2e-15 seq26 89.7 4e-13 seq70 87.8 1e-12 seq663 84.2 2e-11 seq189 84.2 2e-11 >seq78 Length=1009284 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||||||| || ||||| ||| ||| || | || || || ||| | Sbjct 200887 ATGCAGATTTTTGTGAAAACCCTCACTGGAAAAACTATCACCTTGGAGGTGGAGAGCTCG 200828 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | || || | | || ||| || || || ||||| |||| ||| | Sbjct 200827 GATACTATTGATAA-CGTTAAGAC-AAAGATCCAAGATAAGGAAGGGATTCCACCGGACC 200770 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| |||||||| |||||||| |||| || | |||| | | | || |||| Sbjct 200769 AGCAAAGGTTGATTTTTGCTGGAAAACAGCTGGAGGATGGTCGCACCCTTGCAGACTACA 200710 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || || || || ||| |||||||||| | ||| ||||||| || Sbjct 200709 ATATTCAGAAGGAATCAACTCTGCATTTGGTGCTCCGTCTGCGTGGTGG 200661 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||||||||| || ||||| ||| ||| || | || || || ||| | Sbjct 220491 ATGCAGATATTTGTGAAAACCCTCACTGGAAAAACTATCACCTTGGAGGTGGAGAGCTCG 220432 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | || |||||| ||| || || || ||||| |||| ||| | Sbjct 220431 GATACTATTGATAA--CGTCAAAACAAAGATCCAAGATAAGGAAGGGATTCCACCGGACC 220374 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| |||||||| |||||||| |||| || | |||| | | | || |||| Sbjct 220373 AGCAAAGGTTGATTTTTGCTGGAAAACAGCTGGAGGATGGTCGCACCCTTGCAGACTACA 220314 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || || || || ||| |||||||||| | ||| ||||||| || Sbjct 220313 ATATTCAGAAGGAATCAACTCTGCATTTGGTGCTCCGTCTGCGTGGTGG 220265 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| ||||||||||| || |||||| |||| || |||||| | Sbjct 220947 ATGCAGATCTTTGTGAAGACTCTTACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTCT 220888 Query 27850 G--ACGATGTACAATCGGTCAA-ACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGA 27905 | || || ||||| || || || || | | || ||||| ||||| | || ||| Sbjct 220887 GACACAATTGACAAT--GTGAAGACCAAGATTCAG--GACAAGGAAGGGATCCCACCGGA 220832 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 |||||| || | |||||||| || ||||| | || || | | | | | | | || || Sbjct 220831 TCAGCAAAGGCTTATTTTTGCTGGCAAACAGCTTGAAGATGGAAGGACCCTTGCTGACTA 220772 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || || || ||| |||||||||| | ||| ||||||| || Sbjct 220771 TAATATTCAGAAGGAATCTACTCTGCATTTGGTGCTTCGTCTGCGTGGTGG 220721 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| ||||||||||| || |||||| |||| || |||||| | Sbjct 201343 ATGCAGATCTTTGTGAAGACTCTTACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTCT 201284 Query 27850 G--ACGATGTACAATCGGTCAA-ACAAAAAAT-AGCCGACAAAGAAGGTGTTCCGATGGA 27905 | || || ||||| || || || || | | || ||||| ||||| | || ||| Sbjct 201283 GACACAATTGACAAT--GTGAAGACCAAGATTCAG--GACAAGGAAGGGATCCCACCGGA 201228 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 |||||| || | || ||||| || ||||| | || || | | | | | | | || || Sbjct 201227 TCAGCAAAGGCTTATCTTTGCTGGCAAACAGCTTGAAGATGGAAGGACCCTTGCTGACTA 201168 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || || || ||| |||||||||| | ||| ||||||| || Sbjct 201167 TAATATTCAGAAGGAATCTACTCTGCATTTGGTGCTTCGTCTGCGTGGTGG 201117 >seq26 Length=1968749 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || || || ||||| || || || | || || || ||| | Sbjct 78469 ATGCAGATTTTTGTTAAGACCCTCACTGGCAAGACAATCACCTTGGAAGTTGAGAGCTCA 78528 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| || || ||||| |||||| | || ||| | Sbjct 78529 GACACAATTGACAAT--GTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGGACC 78586 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| ||||||| ||||||||||| || | || || | |||| | | | ||||| | Sbjct 78587 AGCAAAGGTTAATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTTGCTGATTATA 78646 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||| || ||| ||| | ||||||||| | ||| | || || ||| Sbjct 78647 ACATCCAGAAGGAGTCCACCCTCCATTTGGTTCTCCGTCTTCGAGGTGGC 78696 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||||||||||||||| ||||| || || || |||| || |||||| | Sbjct 78241 ATGCAAATTTTTGTGAAAACTCTCACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCG 78300 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || ||| || || || || ||||| | || || | Sbjct 78301 GATACTATTGATAAT--GTGAAAGCCAAGATCCAGGATAAGGAAGGGATCCCCCCAGATC 78358 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| || ||||| | || || | ||| | | | | ||||| | Sbjct 78359 AGCAGAGGTTGATCTTTGCTGGCAAACAGCTTGAGGATGGACGAACCCTTGCTGATTATA 78418 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| || |||| | || |||||| | |||||| | || || Sbjct 78419 ACATCCAAAAGGAATCCACTCTCCACTTGGTTCTACGTTTGAGAGGTGG 78467 >seq70 Length=1087276 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||||||||| ||||| || || || |||| || |||||| | Sbjct 268378 ATGCAGATTTTTGTGAAAACTCTCACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCT 268437 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || ||| || || ||||| ||||| |||| || | Sbjct 268438 GACACAATCGACAAT--GTAAAAGCTAAGATCCAGGACAAGGAAGGGATTCCCCCAGATC 268495 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| || ||||| || || ||| | || || | ||||| | | || |||| Sbjct 268496 AGCAAAGGTTGATCTTTGCTGGGAAGCAACTAGAGGATGGACGCACACTCGCTGACTACA 268555 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 ||||||| || ||| ||| | || ||||| Sbjct 268556 ACATCCAGAAGGAGTCCACCCTCCACTTGGT 268586 >seq663 Length=136023 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| || | || ||||| |||||| | || || || |||| | Sbjct 59967 ATGCAGATTTTTGTGAAGACCTTGACCGGGAAGACGATTACACTGGAGGTGGAGAGCAGC 59908 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || |||| ||||| |||||| ||||| || || | || ||| | Sbjct 59907 GACACCATCGACAAC--GTCAAGGCAAAAATCCAGGACAAGGAGGGCATCCCACCGGATC 59850 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || || | || ||||||||||| || ||||| || | | | | |||| | ||||| | Sbjct 59849 AACAGCGTCTGATCTTTGCCGGAAAGCAGTTGGAGGATGGAAGAACCTTGGCGGATTATA 59790 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||| |||||| || | || | || |||||| | ||||| || Sbjct 59789 ATATCCAGAAAGAGTCTACCCTTCACCTTGTCTTGCGTCTCCGTGGTGG 59741 >seq189 Length=529659 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 10/196 (5%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || |||||||| || || || ||| || || |||| ||||| || | Sbjct 461075 ATGCAGATCTTCGTGAAAACCCTGACAGGCAAAACCATAACTCTTGAAGTCGAGAGTTCT 461134 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||||| |||||| ||||| |||||||||||| | || | Sbjct 461135 GA-----TACAATCGACAACGTCAAAGCCAAAATCCAAGACAAAGAAGGTATCCCTCCTG 461189 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| | ||||| || || |||||| | || |||| || | | | |||||| Sbjct 461190 ATCAGCAACGCCTGATTTTCGCTGGCAAACAACTCGAGGACGGCCGTACCCTTGCCGATT 461249 Query 27965 ACAACATCCAAAAAGA 27980 | ||||||||||| || Sbjct 461250 ATAACATCCAAAAGGA 461265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355820699043105