Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq26 100 2e-16 seq41 95.1 1e-14 seq461 91.5 1e-13 seq663 87.8 2e-12 seq2 86.0 5e-12 seq189 82.4 7e-11 >seq26 Length=1968749 Score = 100 bits (110), Expect = 2e-16 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| || |||| ||||| || || ||| || ||||| || |||||||| ||| Sbjct 78467 CCACCTCTCAAACGTAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTATAATCAGCA 78408 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || |||||| | || |||||||||||||| ||||| || | | |||||| || | ||| Sbjct 78407 AGGGTTCGTCCATCCTCAAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGGGGG 78348 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCC 39234 | | || || ||| ||| || ||| | | | | ||||| ||| ||| Sbjct 78347 ATCCCTTCCTTATCCTGGATCTTGGCTTTCACATTATCAATAGTATCCGAGCT---TTCC 78291 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || || | ||||| | || || || || ||||| ||||| |||||||||| Sbjct 78290 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCATCT 78239 >seq41 Length=1573182 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| ||| || || || || ||||| ||||| || || | || || Sbjct 840446 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCATCCTC 840505 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || | | ||||||||| | ||| | || || |||||| Sbjct 840506 CAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTG 840565 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| | | | ||||| |||||| |||| ||||| | || Sbjct 840566 GATCTTAGCCTTGACATTGTCGATGGTATCAGAACTCTCCACCTCCAAGGTGATGGTCTT 840625 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || || || ||||||||||||||||| Sbjct 840626 TCCAGTAAGGGTCTTAACAAAGATTTGCAT 840655 >seq461 Length=207379 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/217 (71%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 39072 TAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTC 39131 || ||| | ||| || || ||| ||||| ||||||||||| || || || | | || Sbjct 160623 TAGCACAAGATGAAGAGTTGACTCCTTTTGAATATTATAATCCGCCAGAGTCCTGCCATC 160564 Query 39132 ATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGT 39190 || ||||| || || ||||| || | | ||||||||| |||||| | | ||| |||| Sbjct 160563 TTCCAGCTGCTTCCCAGCAAAGATCAATCTCTGCTGGTCTGGTGGG-ATCCCCTCCTTGT 160505 Query 39191 CCATGATTTTCTG-TTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 || ||| | | || |||| ||| | | | || ||||| |||||| || | |||||| Sbjct 160504 CC-TGAATCTTTGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCACCTCTAGCGTGAT 160447 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | | ||||| || || || || ||||| || |||||| Sbjct 160446 AGTCTTTCCGGTTAGGGTCTTCACAAAAATCTGCATC 160410 >seq663 Length=136023 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || ||||||||||| || | |||| | | || || | ||| || || ||||| Sbjct 59776 CTCTTTCTGGATATTATAATCCGCCAAGGTTCTTCCATCCTCCAACTGCTTTCCGGCAAA 59835 Query 39153 TATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 || |||||||| || | ||||||| | || ||| |||||| |||||| |||| || Sbjct 59836 GATCAGACGCTGTTGATCCGGTGGG-ATGCCCTCCTTGTCCTGGATTTTTGCCTTGA-CG 59893 Query 39212 TCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 | | | | || ||||| |||||| |||| || || | || || |||| || || Sbjct 59894 TTGTCGATGGTGTCGCTGCTCTCCACCTCCAGTGTAATCGTCTTCCCGGTCAAGGTCTTC 59953 Query 39271 ACAAAGATTTGCAT 39284 ||||| || ||||| Sbjct 59954 ACAAAAATCTGCAT 59967 >seq2 Length=8082884 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || || || ||||| | |||||| || || ||| ||| || || || || || || || Sbjct 7139373 CCACCCCTCAAGCGAAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCG 7139432 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || || ||||| || || || ||||||||||| ||||| | || Sbjct 7139433 AGGGTGCGACCATCCTCGAGTTGTTTCCCAGCGAAAATAAGACGCTGTTGGTCTGGAGGG 7139492 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || ||| |||||| || || ||||| | | | || || ||||| || Sbjct 7139493 ATGCCCTCCTTGTCCTGAATCTTGGCTTTGACATTGTCGATTGTGTCTGATGACTCAACC 7139552 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || | || || | |||||||||| || || || ||||| |||||||| Sbjct 7139553 TCGAGGGTTATGGTCTTTCCCGTCAAGGTCTTCACGAAGATCTGCATCTT 7139602 >seq189 Length=529659 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || ||||| || |||||||||||||| || || |||| || || |||||||| || || Sbjct 461265 TCCTTTTGGATGTTATAATCGGCAAGGGTACGGCCGTCCTCGAGTTGTTTGCCAGCGAAA 461206 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || || || ||||| || | || | | |||||||| |||||| ||||| ||| Sbjct 461205 ATCAGGCGTTGCTGATCAGGAGGGATACCTTCTTTGTCTTGGATTTTGGCTTTGA-CGTT 461147 Query 39214 G-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | ||||| ||| || || | || || |||| || ||||| ||||| || Sbjct 461146 GTCGATTGTATCAGAACTCTCGACTTCAAGAGTTATGGTTTTGCCTGTCAGGGTTTTCAC 461087 Query 39273 AAAGATTTGCAT 39284 ||||| ||||| Sbjct 461086 GAAGATCTGCAT 461075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429495264638495