Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq549 159 3e-34 seq435 131 1e-25 >seq549 Length=172529 Score = 159 bits (176), Expect = 3e-34 Identities = 565/871 (65%), Gaps = 19/871 (2%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 ||||| || || ||||| || |||||||||||||| || |||| || || || Sbjct 31132 TTTTGATACTCTCCTACTCTTTTCTCGAAGAAATTAGTCTTCCCTTGCAAAGATATCAAC 31073 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| |||| || ||||| | | ||||| || | ||| || || | | | Sbjct 31072 TCCATCCAATCGAATGGATTGGCCACATTGTACACCTTCCCGCACCCAAGCGCACCCAAC 31013 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 | | |||||||| || || |||||||| ||||| | || | ||| || || | || Sbjct 31012 ATCCTATCAGCTACGAACTCAATATACTGACTCATTAACTCCCCGTTCATCCCTACCAA- 30954 Query 4437 CTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | | || || ||||||| || |||||| || ||| || || || | | ||| Sbjct 30953 CGCGCATGGCAGCGCGTCCACCACAAACTCCCTCTCAATATCCACAGCATCCTTCACTAT 30894 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAA-----CAC 4550 || | | || || | | | || || || || ||| | || | ||| Sbjct 30893 CCCTCTCACTTGCTCCTCACTCAGCTTCTTC-CTCAG----CAAGCTGTAGAGCAGGCAC 30839 Query 4551 GCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCC 4609 || ||||||||||| | ||||| |||| || | |||| ||||| ||||| |||| || Sbjct 30838 GCGAAATCACAATGAAGCCCTTCATCTC-GCGAGATCAACTCGTTCGAAAAGGTTAGCCC 30780 Query 4610 GGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATAT 4669 ||||| || || | |||||| | ||||||||| || ||| ||| || || ||||| Sbjct 30779 CGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAATAT 30720 Query 4670 GCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAAT 4729 ||||| ||| ||||| || |||| | | |||| || ||| | | ||| Sbjct 30719 CCCTTCCACGCAAGCAAAAGCAACTAGCCTTTCCGCGAAACT-CTCGCTCC--CGTCAAT 30663 Query 4730 CCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA 4789 ||| || ||||| || || || |||||||| | || | ||||| | ||| Sbjct 30662 CCACCGCAAGGCCCACCGTGCCTTCTTAGCCACGCACGGCACCGTTTCGATAGCATGAAA 30603 Query 4790 TAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTC 4849 | | | || || | || | |||||||| || | || || || ||||| || Sbjct 30602 CAGGCGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTC 30543 Query 4850 AGAATGTATATTTTCTATAGCAATCTGAAATCCGT-AAAAGCATCTAGCTTCTGTTACTT 4908 || || ||||| || || || ||||| ||||||| ||||||| | || || | |||| Sbjct 30542 GGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCA-CGCGCCTCCGAGACTT 30484 Query 4909 GAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAA 4968 | || || || || | | | | |||||| || || || ||| ||| || | Sbjct 30483 GGACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGA 30424 Query 4969 AAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGG 5028 | || || | |||||||| || |||| || ||||| || | || |||| ||||||| Sbjct 30423 AGAAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGC 30364 Query 5029 GCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGT 5088 | | ||| | | ||| || || ||| |||||||||| || || || ||||| |||| Sbjct 30363 GGATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGT 30304 Query 5089 ACATAGACCAAATATCAGGATACTGAATCGG 5119 |||| ||| || || |||||||| || Sbjct 30303 ACATCTCCCAGATTGATGGGTACTGAATGGG 30273 >seq435 Length=220439 Score = 131 bits (144), Expect = 1e-25 Identities = 547/852 (64%), Gaps = 11/852 (1%) Strand=Plus/Plus Query 4272 ACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAAC 4331 |||| || ||||||||||| || || |||| || || || ||||| ||||||| Sbjct 104353 ACTCTTTTCTCGAAGAAATTTGTCTTCCCTTGCAAGGATATCAACTCCATCCAATCAAAT 104412 Query 4332 GGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACA 4391 ||||||| | ||||| || | ||| || || | | || | ||||||||| Sbjct 104413 GGATTAGCCACATTGTACACCTTCCCGCACCCAAGCGCACCCAACAGCCTATCAGCTACA 104472 Query 4392 AATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACA-GGTAGCGC 4450 || || |||||||| ||||| | ||| | || || || | || | || ||||||| Sbjct 104473 AACTCAATATACTGACTCATCAATTCCCCATTCATCCCCACCAAAG-CGCATGGTAGCGA 104531 Query 4451 GTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATC 4510 || || |||||| |||||| || || || | | ||| | || | || Sbjct 104532 GTCCACCACAAACTCCCTCTCTATATCCACAGCCTCCTTCACTATCCCCTTCACGCGCTC 104591 Query 4511 TTTAGATGGTTTATTTACTAAGTATCCAAACAATAAA-CACGCAAAATCACAATGCAAAC 4569 | | |||| || || | | | || || ||||| ||||||||||| | | Sbjct 104592 CTCACTCAGTTTCTTC-CTCAACAGGCTGTAAAGAAGGCACGCGAAATCACAATGAAGCC 104650 Query 4570 CTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTT 4628 |||| |||| || | |||| ||||| || || || | || ||||||| || | ||| Sbjct 104651 CTTCATCTC-GCGAGATCAACTCGTTCGAGAAGGTCAGGCCTGGCATTAGCCCACGTTTT 104709 Query 4629 TTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAAC 4688 || ||||||||||| || ||| ||| || || ||||| ||||| ||| ||||| Sbjct 104710 TTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTTCCACGCAAGCAAAT 104769 Query 4689 GCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTA 4748 || | ||| | | | || | || |||| ||||| ||| ||||| | Sbjct 104770 GCGATTAACCTCTCCGCAAAACTCTCGCCTCCGTCT---ATCCACCGTAAAGCCCACTCC 104826 Query 4749 GCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAAT 4808 || || || || ||||| | || | || || | ||| | | || ||| Sbjct 104827 GCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAACAGACGGTTCTTCTCAGTA 104886 Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 | || | || || || || | | || || ||||| || || || ||||| || || Sbjct 104887 GAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACATCTCCGAGTGGATATTCTCAATC 104946 Query 4869 GCAATCTGAAATCCGTA-AAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCT 4927 || ||||| || ||||| |||||| | || || | ||||| ||||| || || | Sbjct 104947 GCGATCTGGAACCCGTAGAAAGCA-CGCGCCTCCGAGACTTGGACTTCTTTCATGAAACG 105005 Query 4928 TTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGA 4987 | | | || ||| || || || ||| ||| || || || || | || ||||| Sbjct 105006 CCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCAGCGAAGAAGGCAAGGACGTGAGA 105065 Query 4988 TATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATC 5047 || |||| | |||||||| | || |||| |||||| | | |||| || | ||| Sbjct 105066 AATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTGACGGAGATCTGAAGAGAGATC 105125 Query 5048 AACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGG 5107 || |||||| | ||||||||||| ||||| || || |||||||| ||| || || Sbjct 105126 GACCTCTTCAGCCGTCCAAAACGAGGCTTCAGCCTTCTTGTACATCTCCCAGATTGATGG 105185 Query 5108 ATACTGAATCGG 5119 ||| ||||| || Sbjct 105186 ATATTGAATTGG 105197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426999557126795