Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_031017.1 Length=32409 Score E Sequences producing significant alignments: (Bits) Value seq2164 425 1e-114 >seq2164 Length=27727 Score = 425 bits (470), Expect = 1e-114 Identities = 406/520 (78%), Gaps = 0/520 (0%) Strand=Plus/Minus Query 28673 AATGAGTTTAGATAATTTCAAAAAGCAAACTATTACATGGGATATGATTAACCAGGCATT 28732 |||||||||||||||||| ||||| | | ||| |||||||| | | || | | || Sbjct 21269 AATGAGTTTAGATAATTTTAAAAATAGAGCGATTGTATGGGATACGGTCAATAAAGGCTT 21210 Query 28733 TGAACAGCCCATTCAAATTATGGAGGGAGATGTCAATGCAAGAACGATACTTCTTAAGAT 28792 ||| || |||||||| ||| | || || ||||| || ||||| | |||| || Sbjct 21209 CCCACAACCAATTCAAATAATGCAAGGCGACGTCAACGCTAGAACATTGTCAATTAAAAT 21150 Query 28793 AACTGATAATGGTTCTGTACTTGACTTAACAGGTTATTCAGTAAAATTAACCTATCAATA 28852 | ||||||||| | | |||| || || ||| ||||| ||||| | || |||||||| Sbjct 21149 ACTTGATAATGGAGGCGAAATTGATTTGACTGGTCATTCATTAAAACTTACATATCAATA 21090 Query 28853 TATGTATAAATCTCAATCAGGTTTTATTATGTTAACTCCTAATGATATATCCAAGGGAGA 28912 || ||| | | ||||||||| ||||| | ||||| | | || | |||||||| Sbjct 21089 TACTAATAGCAGTAATTCAGGTTTTGTTATGATTCCTCCTGAAAACTTAACTAAGGGAGA 21030 Query 28913 ATTCACGCTTATAATTCCTACTGAGATGACAGTATCAGGATTAATAAAATCAAATTTAAT 28972 || | | |||||||||| || ||||||| | | ||| | || || | || ||||| Sbjct 21029 GTTTATTTTAGTAATTCCTACCGAAATGACAGAAACTGGAGTTATTGAAGCGAACTTAAT 20970 Query 28973 ACTCCTCAATGAAGATAAAGAACAAGTTATTGTCAGTAAGAATTTAACATTTATATCAGA 29032 ||| ||||||||||||||||| || ||||| ||||| ||||| | || ||||||||||| Sbjct 20969 ACTTCTCAATGAAGATAAAGAGCAGGTTATCGTCAGCAAGAACCTTACGTTTATATCAGA 20910 Query 29033 TGATTCTACAGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGATTTTACAAA 29092 | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20909 TAATTCTACGGTTACAGATTTAGCTCAAGAAGTAAATAATAAGATTGATGATTTTACAAA 20850 Query 29093 ATTATTATTGGGGAAAATGCCACAAGTGTTGCGTAGTGAGTTGAATGACTTACACGCTCA 29152 ||||||||||| || ||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 20849 ATTATTATTGGAAAATATGCCACAAGTAATGCGTAGTGAGTTGAATGACTTACATGCTCA 20790 Query 29153 AACTGAATCAAATACAAGCAACATCGAGCTTAAAGCAAAT 29192 |||||||||||| | ||||| || ||||||||||| ||| Sbjct 20789 AACTGAATCAAACAAGAGCAATATTGAGCTTAAAGCCAAT 20750 Score = 145 bits (160), Expect = 2e-30 Identities = 97/108 (90%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 29565 TTAATCACAAATCAAAATGTGACAACTGCTCAAACAACAGCAAATCAAGCTAAAACTGAT 29624 |||||||||||||||||||| |||||||||||| ||||||||| |||||| ||| ||| Sbjct 20668 TTAATCACAAATCAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAA 20609 Query 29625 GCCCAAGCTGCAATGACAAAGGCTACCGAAGCACAAGCGAACAGTTTA 29672 ||| || ||||||| |||||||||||||||||||||||||||||||| Sbjct 20608 GCCAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAACAGTTTA 20561 Score = 129 bits (142), Expect = 1e-25 Identities = 84/92 (91%), Gaps = 3/92 (3%) Strand=Plus/Minus Query 30245 ATATACGACTGGGACATGGCAAAATATTGGTTCAGCAGTAATTGGTTCAACAACAATATA 30304 ||||| || || ||||||||||||| ||||| | |||||||||||||||||||||||| Sbjct 18893 ATATAGGATTG---CATGGCAAAATATCGGTTCGGTAGTAATTGGTTCAACAACAATATA 18837 Query 30305 TTATTGGAAACGCACTGCATaaaaaataaaaa 30336 |||||||||||||||||||||||||||||||| Sbjct 18836 TTATTGGAAACGCACTGCATAAAAAATAAAAA 18805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103575372607730