Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq435 284 2e-71 seq549 205 1e-47 seq23 120 4e-22 seq131 111 2e-19 seq14 111 2e-19 >seq435 Length=220439 Score = 284 bits (314), Expect = 2e-71 Identities = 607/900 (67%), Gaps = 10/900 (1%) Strand=Plus/Plus Query 47850 TTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 47909 |||||||| || || || | ||||||||| ||||| || || |||| ||| ||||| Sbjct 104338 TTTTGATACTCCCCGACTCTTTTCTCGAAGAAATTTGTCTTCCCTTGCAAGGATATCAAC 104397 Query 47910 TCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATC 47969 ||||| |||||||||||||| | |||| || | || | || | | | | Sbjct 104398 TCCATCCAATCAAATGGATTAGCCACATTGTACACCTTCCCGCACCCAAGCGCACCCAAC 104457 Query 47970 AGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT--AA 48027 || ||||| || || || || ||||| |||||| ||| | |||||| || | || Sbjct 104458 AGCCTATCAGCTACAAACTCAATATACTGACTCATCAATTCCCCATTCATCCCCACCAAA 104517 Query 48028 GTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTA 48087 | | |||||| | ||| | |||||| || ||| ||||| ||| | || Sbjct 104518 GCGCA--TGGTAGCGAGTCCACCACAAACTCCCTCTCTATATCCACAGCCTCCTTCACTA 104575 Query 48088 TCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATG--TTTAAACATTAAACATGC 48145 || | || |||||||| || | | ||| | | |||| | | || || Sbjct 104576 TCCCCTTCACGCGCTCCTCACTCAGTTTCTTCCTCAACAGGCTGTAAAGA--AGGCACGC 104633 Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 |||||||||||||| |||||||||| || || ||||| || || || || || || Sbjct 104634 GAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGGCCTGG 104693 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265 |||||| ||||||||||| ||||||||||| || ||| || || || ||||| || Sbjct 104694 CATTAGCCCACGTTTTTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCC 104753 Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGTATCCACCG 48325 ||| ||| ||||||||| | | ||||| | |||| | | || ||||||||| Sbjct 104754 TTCCACGCAAGCAAATGCGATTAACCTCTCCGCAAAACTCTCGCCTCCGTCTATCCACCG 104813 Query 48326 TTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 | ||||| || |||||||| ||||| |||| || || || |||| ||| ||| Sbjct 104814 TAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAACAGACG 104873 Query 48386 GtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTG 48445 ||| || ||| | ||| || | ||| || || | |||||||| ||||| || ||||| Sbjct 104874 GTTCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACATCTCCGAGTG 104933 Query 48446 AATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||| ||||| || ||||| || ||||| ||| | ||| || | || || || || Sbjct 104934 GATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTTGGACTTC 104993 Query 48506 CGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGC 48565 | || || | || | |||||| || ||||||||| ||||| || || || Sbjct 104994 TTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCAGCGAAGAAGGC 105053 Query 48566 TAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATC 48625 | || || ||| || | ||| |||| | |||||| || | ||||| | || ||| Sbjct 105054 AAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTGACGGAGATC 105113 Query 48626 TTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATT 48685 | || | ||| || |||||||| |||||||| || || || || || || ||||| | Sbjct 105114 TGAAGAGAGATCGACCTCTTCAGCCGTCCAAAACGAGGCTTCAGCCTTCTTGTACATCTC 105173 Query 48686 CCATATATCACTG-TATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAAGGA 48744 ||| || | | | ||||| |||||||| ||| |||| | ||| |||| || |||| Sbjct 105174 CCAGAT-TGATGGATATTGAATTGGGAACATACAGAATCGGTCTGGGTTTTCAGCGAGGA 105232 >seq549 Length=172529 Score = 205 bits (226), Expect = 1e-47 Identities = 601/922 (65%), Gaps = 8/922 (1%) Strand=Plus/Minus Query 47834 AGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCC 47893 |||||||||| |||||||| || || || | ||||||||| |||||||| || || Sbjct 31148 AGACATAACTGAGGCCTTTTGATACTCTCCTACTCTTTTCTCGAAGAAATTAGTCTTCCC 31089 Query 47894 TTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAA 47953 || ||| ||||| ||||| |||| |||||||| | |||| || | || | Sbjct 31088 TTGCAAAGATATCAACTCCATCCAATCGAATGGATTGGCCACATTGTACACCTTCCCGCA 31029 Query 47954 TCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACA 48013 || | | | || ||||| || ||||| || ||||| |||| | || | Sbjct 31028 CCCAAGCGCACCCAACATCCTATCAGCTACGAACTCAATATACTGACTCATTAACTCCCC 30969 Query 48014 ATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGAC 48073 ||||| |||| | ||| || || ||| | |||||| || ||| || Sbjct 30968 GTTCATCCCTACCAACGCGCATGGCAGCGCGTCCACCACAAACTCCCTCTCAATATCCAC 30909 Query 48074 AGCATCCACTATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACA--AATGTTTA 48131 ||||||| | |||| | | || |||||||| | | | || || | || Sbjct 30908 AGCATCCTTCACTATCCCTCTCACTTGCTCCTCACTCAGCTTCTTCCTCAGCAAGCTGTA 30849 Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 | | || || |||||||||||||| |||||||||| || || ||||| ||| Sbjct 30848 GAGC--AGGCACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAA 30791 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || || || || ||||| | ||||| ||||| | ||||||||| || ||| || Sbjct 30790 AAGGTTAGCCCCGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCC 30731 Query 48252 GAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTG--GCTT 48309 || || ||||| ||||| ||| ||||| || || || || || |||| ||| Sbjct 30730 GAGAAAAATATCCCTTCCACGCAAGCAAAAGCAACTAGCCTTTCCGCGAAACTCTCGCTC 30671 Query 48310 CGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTA 48369 | || |||||||| ||||| |||||||| || || |||| ||||| | Sbjct 30670 CC--GTCAATCCACCGCAAGGCCCACCGTGCCTTCTTAGCCACGCACGGCACCGTTTCGA 30613 Query 48370 TAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGAC 48429 |||||| ||| || || || || | ||| || | ||||| || | | ||||| Sbjct 30612 TAGCATGAAACAGGCGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGAC 30553 Query 48430 TATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTT 48489 | ||||| |||||||| ||||| ||||| || ||||| |||||||||||| | ||| | Sbjct 30552 TGTACATCTCGGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCT 30493 Query 48490 CTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCAC 48549 | | || || ||||| | || || | || | ||| || || || |||||| Sbjct 30492 CCGAGACTTGGACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAG 30433 Query 48550 TAGCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTAT 48609 || || || || || | ||||| || || | || |||| || |||||| || | Sbjct 30432 AGGCGGCGAAGAAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTT 30373 Query 48610 TCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTG 48669 ||||| |||||| || | ||| || || ||||| |||||||| || ||||| | Sbjct 30372 CCCAGTGGCGGATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAG 30313 Query 48670 CTTTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTG 48729 |||| || ||||| | ||| || ||| || || ||||| ||| || | | || Sbjct 30312 CTTTCTTGTACATCTCCCAGATTGATGGGTACTGAATGGGGAACATACAGAACCGGTCTG 30253 Query 48730 GATTTTTTGCAAGGATAGGTTC 48751 | |||| || |||| ||||| Sbjct 30252 GGTTTTCAGCCAGGAGGGGTTC 30231 >seq23 Length=2045696 Score = 120 bits (132), Expect = 4e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | ||| || | ||| | || | ||||||||||| ||| || Sbjct 906676 CCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCAACATTGGAACAATGCCA 906617 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||||||| ||||||||||||| | || || || || || ||| Sbjct 906616 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCACGGATGTTGTGAACAGAT 906557 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || ||| || | ||| || ||||||||||| || || Sbjct 906556 ACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATATT 906497 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 || || ||||| ||||| ||||| Sbjct 906496 CCTTCAATACTATCATCTTTCATG 906473 Score = 86.0 bits (94), Expect = 9e-12 Identities = 123/171 (72%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 ||||||||||| | || ||||| |||||||| | |||||| ||| |||| || Sbjct 907154 TCTCTTTCATAGCGGGTGTATAGTTCCTCAAATTCTTTGCCCCAACAATCTGCCAAACCC 907095 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAAA 78016 || ||| | ||||| | |||||||| | |||| | | || ||||| || |||||| Sbjct 907094 GGAGCCTCACTAGGGCAAAATAATGACCATTGCCCAT-TGCTTTGAACTCTTTCCATAAA 907036 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||||| | ||| |||||| |||| ||| || | | |||||||| Sbjct 907035 GAGATCAGGAACCCACAGAGCATAGAATAAATCCCGAGCACGGTGTTCTTC 906985 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/135 (74%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 77493 ATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAA 77552 || |||| |||||| | || ||||||||||| ||||| ||||||||||| ||| || Sbjct 908027 ATGAAGGTATCTGCGAGACCTTGAACTCCAATGCCAATGGGTCTATGTCTGAAATTTGAC 907968 Query 77553 ATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATT---TCTA 77609 || |||| | || ||| || ||||||| || || ||||| |||||||| | || Sbjct 907967 CTTCTAGCAGTTTCAACAGGGTAGTAATTAACATCGATTATTTTGTTGAGATTGACTGTA 907908 Query 77610 ACAACTACTTTAACC 77624 || ||| || ||||| Sbjct 907907 ACCACTCCTGTAACC 907893 >seq131 Length=684295 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 |||||||||||| || ||||| || ||||||||| | ||||||| || | |||| || Sbjct 385981 CTCTCTTTCATACTGGGTATACAGTTTTTCAAATTCTTGTCCCCAACAATTAGCCAAACC 385922 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || ||| | ||||| | ||| ||||| | |||| | ||||| || ||| || Sbjct 385921 TGGAGCCTCACTAGGGCAAAACAAAGACCATTTGTCATCACCTCGAACTCTTTCCATGAA 385862 Query 78017 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 ||||||||| ||||| ||||||| |||| ||||| | || ||||||||| Sbjct 385861 GAGATCAGGAATCCAAAGAGCAAGGAATAAGTCTCGAGCTCGATGTTCTTC 385811 >seq14 Length=2767599 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 ||||| ||||| | ||| | ||| || | ||| | || ||||||||||||| || || Sbjct 700399 CCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCAACATTGGAACAACGCCA 700458 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| |||||||| ||| ||||||||||||| | || || || || ||| Sbjct 700459 TTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCACGGATGTTGTGGGCAGAT 700518 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || ||||||||||| ||| || | ||| || ||||||||||| || || Sbjct 700519 ACACCGATTCCTCCTGCTGATTTACTGATAATAGCACACTCCTTCAATGTATCATATATT 700578 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 || || ||||| ||||| ||||| Sbjct 700579 CCTTCAATACTATCATCTTTCATG 700602 Score = 86.0 bits (94), Expect = 9e-12 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 77900 TCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGG 77959 |||||||||| | || ||||| ||||| || | |||||| ||| |||| || || Sbjct 699929 TCTTTCATATCGGGTGTATAGTTCCTCAAACTCTTTGCCCCAACAATCTGCCAAACCTGG 699988 Query 77960 GCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAAAGA 78018 |||||| ||||| | ||||||||| | || | | | || ||||| | |||||||| Sbjct 699989 AGCTTCATTAGGGCAAAACAATGACCATTGCCCGT-TGCTTTGAACTCTCTCCATAAAGA 700047 Query 78019 GATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052 ||||||| | ||| |||||| |||| |||||| Sbjct 700048 GATCAGGAACCCACAGAGCATAGAATAAATCTCG 700081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694585309493600