Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq435 228 1e-54 seq549 196 7e-45 seq23 152 7e-32 seq14 143 4e-29 seq131 102 1e-16 >seq435 Length=220439 Score = 228 bits (252), Expect = 1e-54 Identities = 587/890 (66%), Gaps = 8/890 (1%) Strand=Plus/Plus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 ||||| || || || || | ||||||||| ||||| || || |||| ||| ||||| Sbjct 104338 TTTTGATACTCCCCGACTCTTTTCTCGAAGAAATTTGTCTTCCCTTGCAAGGATATCAAC 104397 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| ||||||| ||||||| ||||| || | || | || | | | | Sbjct 104398 TCCATCCAATCAAATGGATTAGCCACATTGTACACCTTCCCGCACCCAAGCGCACCCAAC 104457 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 || ||||| || || || || |||||| |||||| ||| | |||||| || | | Sbjct 104458 AGCCTATCAGCTACAAACTCAATATACTGACTCATCAATTCCCCATTCATCCCCACCAAA 104517 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 | ||||| | ||| | |||||| || ||| ||||| ||| | |||| Sbjct 104518 GCGCATGGTAGCGAGTCCACCACAAACTCCCTCTCTATATCCACAGCCTCCTTCACTATC 104577 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATG--TTTAAACATTAAACATGCAA 46636 | || |||||||| || | | |||| | | |||| | | || || | Sbjct 104578 CCCTTCACGCGCTCCTCACTCAGTTTCTTCCTCAACAGGCTGTAAAGA--AGGCACGCGA 104635 Query 46637 AATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCA 46696 ||||||||||||| |||||||||| || || ||||| || || || || || |||| Sbjct 104636 AATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGGCCTGGCA 104695 Query 46697 TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTT 46756 |||| ||||| ||||| ||||||||||| || ||| || || || ||||| |||| Sbjct 104696 TTAGCCCACGTTTTTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTT 104755 Query 46757 CTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA--CTGGCATCATTATGAATCCACCT 46814 | || || ||||||| | ||||| | || || || || | | ||||||| Sbjct 104756 CCACGCAAGCAAATGCGATTAACCTCTCCGCAAAACTCTCGCCTCCGTCT--ATCCACCG 104813 Query 46815 TTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 46874 | |||||| || ||||| || ||||| |||| || || || |||| ||| ||| Sbjct 104814 TAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAACAGACG 104873 Query 46875 GtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATG 46934 ||| || ||| | ||| || | || || || | |||||||| ||||| || || || Sbjct 104874 GTTCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACATCTCCGAGTG 104933 Query 46935 AATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTC 46994 || || ||||| || ||||| || ||||| ||| | || || | | || || || Sbjct 104934 GATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTTGGACTTC 104993 Query 46995 TGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGC 47054 | | || || | | | |||||| || ||||||||| ||||| || || || Sbjct 104994 TTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCAGCGAAGAAGGC 105053 Query 47055 CAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATC 47114 | || || ||| || | ||| || || | |||||| || | ||||| | || ||| Sbjct 105054 AAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTGACGGAGATC 105113 Query 47115 TTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATT 47174 | || | ||| || |||||||| ||||| || || || || || || || ||||| | Sbjct 105114 TGAAGAGAGATCGACCTCTTCAGCCGTCCAAAACGAGGCTTCAGCCTTCTTGTACATCTC 105173 Query 47175 CCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT 47224 ||| || ||||||| || || || ||| |||| | ||| |||| Sbjct 105174 CCAGATTGATGGATATTGAATTGGGAACATACAGAATCGGTCTGGGTTTT 105223 >seq549 Length=172529 Score = 196 bits (216), Expect = 7e-45 Identities = 551/844 (65%), Gaps = 4/844 (0%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 46398 ||||| || || ||||| | ||||||||| |||||||| || |||| ||| ||||| Sbjct 31132 TTTTGATACTCTCCTACTCTTTTCTCGAAGAAATTAGTCTTCCCTTGCAAAGATATCAAC 31073 Query 46399 TCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAATC 46458 ||||| |||| || ||||| | ||||| || | || | || | | | | Sbjct 31072 TCCATCCAATCGAATGGATTGGCCACATTGTACACCTTCCCGCACCCAAGCGCACCCAAC 31013 Query 46459 AGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGT 46518 | ||||| || ||||| || |||||| |||| | || | ||||| |||| | Sbjct 31012 ATCCTATCAGCTACGAACTCAATATACTGACTCATTAACTCCCCGTTCATCCCTACCAAC 30953 Query 46519 TTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATC 46578 | || || || ||| | |||||| |||||| ||||||||| | |||| Sbjct 30952 GCGCATGGCAGCGCGTCCACCACAAACTCCCTCTCAATATCCACAGCATCCTTCACTATC 30893 Query 46579 GATGTTACTGTTTCCTCACTTGGTGGATGCATCA--AATGTTTAAACATTAAACATGCAA 46636 | | ||| |||||||| | | | ||| || | || | | || || | Sbjct 30892 CCTCTCACTTGCTCCTCACTCAGCTTCTTCCTCAGCAAGCTGTAGAGC--AGGCACGCGA 30835 Query 46637 AATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCA 46696 ||||||||||||| |||||||||| || || ||||| ||||| || ||||| |||| Sbjct 30834 AATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAAAAGGTTAGCCCCGGCA 30775 Query 46697 TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTT 46756 | | ||||||||||| | ||||||||| || ||| || || || ||||| |||| Sbjct 30774 TCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTT 30715 Query 46757 CTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCACCTTT 46816 | || || || || || || || || || |||| | | |||||||| Sbjct 30714 CCACGCAAGCAAAAGCAACTAGCCTTTCCGCGAAACTCTCGCTCCCGTCAATCCACCGCA 30655 Query 46817 GAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGt 46876 ||||| ||||| || || || |||| ||||| ||||||| ||| || | Sbjct 30654 AGGCCCACCGTGCCTTCTTAGCCACGCACGGCACCGTTTCGATAGCATGAAACAGGCGAT 30595 Query 46877 ttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAA 46936 | || || ||| ||| || | ||| || || | | |||||| ||||| || || || | Sbjct 30594 TCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTCGGAGTGGA 30535 Query 46937 TGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTG 46996 | || ||||| || ||||| |||||||||||| | || || | | || |||||| Sbjct 30534 TATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTGGACCTCTT 30475 Query 46997 TACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCA 47056 | || || | | | ||| || || || |||||| || || || || || | Sbjct 30474 TCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGAAGAAGGCAA 30415 Query 47057 ATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTT 47116 ||||| || || | || || |||| |||||| || | ||||| |||||| Sbjct 30414 GGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGCGGATATCCG 30355 Query 47117 TTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCC 47176 || | ||| || || ||||| ||||| || || ||||| ||||| || ||||| | || Sbjct 30354 ACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACATCTCCC 30295 Query 47177 ATAT 47180 | || Sbjct 30294 AGAT 30291 >seq23 Length=2045696 Score = 152 bits (168), Expect = 7e-32 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | |||||| | ||| | || | ||||||||||| |||||| Sbjct 906676 CCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCAACATTGGAACAATGCCA 906617 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||||||| ||||||||||||| ||||| || || || |||| Sbjct 906616 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCACGGATGTTGTGAACAGAT 906557 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || |||| ||| | |||||| |||||||| ||||| || Sbjct 906556 ACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATATT 906497 Query 76934 CCCTCTATACTATCATCCATCATG 76957 || || ||||||||||| ||||| Sbjct 906496 CCTTCAATACTATCATCTTTCATG 906473 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/135 (74%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 76088 ATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAA 76147 || || | |||||| || || ||||||||||| ||||| ||||||||||| ||| || Sbjct 908027 ATGAAGGTATCTGCGAGACCTTGAACTCCAATGCCAATGGGTCTATGTCTGAAATTTGAC 907968 Query 76148 ATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT---TCTG 76204 || ||| | || |||||| ||||||| ||| || ||||| |||||||| | | Sbjct 907967 CTTCTAGCAGTTTCAACAGGGTAGTAATTAACATCGATTATTTTGTTGAGATTGACTGTA 907908 Query 76205 ACAACTACTTTAACC 76219 || ||| || ||||| Sbjct 907907 ACCACTCCTGTAACC 907893 >seq14 Length=2767599 Score = 143 bits (158), Expect = 4e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | |||||| | ||| | || ||||||||||||| || ||| Sbjct 700399 CCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCAACATTGGAACAACGCCA 700458 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||| ||| ||||||||||||| ||||| || || |||| Sbjct 700459 TTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCACGGATGTTGTGGGCAGAT 700518 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||||||||| |||| ||| | |||||| |||||||| ||||| || Sbjct 700519 ACACCGATTCCTCCTGCTGATTTACTGATAATAGCACACTCCTTCAATGTATCATATATT 700578 Query 76934 CCCTCTATACTATCATCCATCATG 76957 || || ||||||||||| ||||| Sbjct 700579 CCTTCAATACTATCATCTTTCATG 700602 Score = 89.7 bits (98), Expect = 7e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| ||||| || | || ||||| ||||||||||||||| | ||| | | || | Sbjct 700777 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCATCGCTGAGACATCAAATGG 700836 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||| ||| ||| || ||||| || |||||||| ||||| || | ||||| | Sbjct 700837 TACGTTTTGATAGCTGAATCAATATCATCTTTGTGAATTCCAACAGCAACCCTCATCAGC 700896 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || |||||||| | ||| ||| ||| | | |||| | ||| ||| |||| | Sbjct 700897 ATGTGCTGAGGCCTTTCCACAACCTTTCCTTGGACCTTCAGGAGGTAGGATCTTTCAAGC 700956 Query 77174 GTTTTAAAACCAAAATA 77190 || || || ||||| || Sbjct 700957 GTCTTGAAGCCAAAGTA 700973 >seq131 Length=684295 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||||||||| || ||||| | ||||||||| | ||||||| || | ||||||| Sbjct 385981 CTCTCTTTCATACTGGGTATACAGTTTTTCAAATTCTTGTCCCCAACAATTAGCCAAACC 385922 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| ||| | || || | ||| ||||| | |||| | ||| | || ||| || Sbjct 385921 TGGAGCCTCACTAGGGCAAAACAAAGACCATTTGTCATCACCTCGAACTCTTTCCATGAA 385862 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||||||| ||||| ||||||| |||| ||||| | || | ||||||| Sbjct 385861 GAGATCAGGAATCCAAAGAGCAAGGAATAAGTCTCGAGCTCGATGTTCTTC 385811 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | |||||||| || | |||| | ||| |||| || ||| Sbjct 385247 CCTCCTTGATCAACATAGCGAGCAGTGTTGTTGAACACTCGAAGCATGGGAACTATACCG 385188 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || ||||||||||| || ||| ||||| || || | |||||| || || Sbjct 385187 TTGGAAGTACCATTTGTCCCCTGAATGTAACTGCCTGTGGCGTGGATATTATGAACAGCA 385128 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || | ||| || | |||||| |||| || ||||| ||| Sbjct 385127 ATACCAATTCCTCCAGCTAATTTGCTAATAACAGCACACTCCTTCAGAGTATCATATATG 385068 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 || | || || ||||| ||||| || ||||| || || Sbjct 385067 CCTCCAATGCTGTCATCTTTCATGCACAGGAGAAAGCAACT 385027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712848714196800