Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_031040.1 Length=31987 Score E Sequences producing significant alignments: (Bits) Value seq2164 190 4e-44 >seq2164 Length=27727 Score = 190 bits (210), Expect = 4e-44 Identities = 108/110 (98%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 27863 AATCACAAATAAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAAGC 27922 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20666 AATCACAAATCAAAATGTAACAACTGCTCAAGAAACAGCAAAACAAGCTGAAAGTGAAGC 20607 Query 27923 CAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAACAGTTTACCAC 27972 |||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 20606 CAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAACAGTTTAACAC 20557 Score = 113 bits (124), Expect = 9e-21 Identities = 88/102 (86%), Gaps = 6/102 (6%) Strand=Plus/Minus Query 28871 ATGGGAAAATATCGGTTCGGTAGTGGTTGGTTCAACGACAATATATTATTGGAAACGTAC 28930 |||| ||||||||||||||||||| |||||||||| |||||||||||||||||||| || Sbjct 18881 ATGGCAAAATATCGGTTCGGTAGTAATTGGTTCAACAACAATATATTATTGGAAACGCAC 18822 Query 28931 TGCATAAAAATATAAAAAATAGGAGAGTAAAATGAATCAAAT 28972 |||||||||| |||||| |||| | ||||| ||| |||| Sbjct 18821 TGCATAAAAA-ATAAAA---AGGAAAATAAAA--AATGAAAT 18786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102225126793870