Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_031269.1 Length=51884 Score E Sequences producing significant alignments: (Bits) Value seq5129 80.6 9e-11 >seq5129 Length=4579 Score = 80.6 bits (88), Expect = 9e-11 Identities = 129/180 (72%), Gaps = 14/180 (8%) Strand=Plus/Minus Query 3476 CGGCGGCGACGTGTACGACGCGCTGGCCATCACCAACGCGCT---GCGCAATCACGACGC 3532 ||||||| ||| |||||| ||||| ||| ||||||||| |||||| ||| | Sbjct 224 CGGCGGCAGCGTCAACGACGGCCTGGCGATCTACAACGCGCTCAAGCGCAAGG-CGAAG- 167 Query 3533 GACGG--TGACGGTGCAG------GTCGACAGCCTCGCCGCCAGCGCAGCCAGCTTCATC 3584 | ||| | || ||||| || ||| || ||||||||||| |||||| | ||| Sbjct 166 GCCGGCATTACCGTGCACACGCACGTGGACGGCATCGCCGCCAGCATCGCCAGCCTGATC 107 Query 3585 GCGATGGCCGGCGACGAGGTCGTGATGTGCCGCAACTCCGAGCTGATGATCCACGACGCC 3644 ||||||||||||||| |||| ||| |||||| | ||||||||||||| |||| Sbjct 106 GCGATGGCCGGCGACCAGGTGCACATGGCGCGCAACACGCGCCTGATGATCCACG-CGCC 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 165888257026980