Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 >seq1 Length=48367220 Score = 131 bits (144), Expect = 2e-25 Identities = 391/589 (66%), Gaps = 17/589 (3%) Strand=Plus/Plus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 ||||||||||| || ||||| || ||||| |||| ||| | ||||| || || || Sbjct 31903146 AGACACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTC 31903205 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | ||||||||| || ||||| |||||||| ||||||||| ||| |||||| || Sbjct 31903206 AGGCCTGGCATTAGCCCACGTTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAA 31903265 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 ||||| || || || | |||||||| ||||| | ||||| | | | || | Sbjct 31903266 AATATCCCTTCCACGCAAGCAAAAGCAATTAACCTCTCCGCAAAACTCTCGCCTCCGT-- 31903323 Query 16379 CGAATCCATTTCTGTA---CCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATG 16435 || ||||| | ||| |||| || || || | | ||| || ||| || ||| Sbjct 31903324 CG-ATCCA---CCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATG 31903379 Query 16436 GCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 || | ||||| | || || | ||| | || || || || | || | |||| Sbjct 31903380 GCATGAAACAGGCGGTTCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTG 31903439 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAG-AAGCATCGAGCCTC 16554 ||||| |||||||| || ||||| || || ||||| || || ||| ||||| || ||||| Sbjct 31903440 TACATCTCTGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCA-CGCGCCTC 31903498 Query 16555 CGCTATTTGTACTTC-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613 || | ||| ||||| | | ||| || | || | ||||| ||||| || ||| Sbjct 31903499 CGAGACTTGGACTTCTTTCATGAAA-CGCCCGGCGATATTCTCGAGGACGATTCCATCAG 31903557 Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATAT 16673 || || || || || | | ||| |||||| | ||| ||||||| || || | | Sbjct 31903558 AGGCGGCGAAGAAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTT 31903617 Query 16674 GCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTG 16733 ||| | | |||| || | ||| || ||||| | ||||||||| || | | Sbjct 31903618 CCCAGTGACCGACATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAATGAGGCTTCAG 31903677 Query 16734 CCTTTTTATACATTTTCCAAATATCATTG-TATTGTA-TGGGAA-ATAC 16779 | || || ||||| | ||| || | || | ||||| | |||||| |||| Sbjct 31903678 CTTTCTTGTACATCTCCCAGAT-TGATGGATATTGAATTGGGAACATAC 31903725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511398328802480