Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 206 3e-48 seq17 145 9e-30 seq5 109 7e-19 seq7 95.1 1e-14 >seq1 Length=48367220 Score = 206 bits (228), Expect = 3e-48 Identities = 413/607 (68%), Gaps = 4/607 (1%) Strand=Plus/Plus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| |||||||| || || || || || |||| || || ||||| || || || || Sbjct 31903148 ACACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAG 31903207 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAAGA 24252 || |||||||| ||||| ||||| | ||||||||| | | |||| ||| || || | Sbjct 31903208 GCCTGGCATTAGCCCACGTTTTTTTAACCAAAATATCG-CACAAAAACTCCCCGAGAAAA 31903266 Query 24253 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTA 24312 | || ||||| || ||||| ||||| | || || || ||| ||| | | | Sbjct 31903267 ATATCCCTTCCACGCAAGCAAAAGCAATTAACCTCTCCGCAAAACTCTCGCCTCCGTCGA 31903326 Query 24313 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 24372 ||||| | |||||| || |||||||| ||||| |||| ||||| || |||| || Sbjct 31903327 TCCACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAA 31903386 Query 24373 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 24432 | || ||| || ||| || ||| || | || || || | ||||||||| ||||| | Sbjct 31903387 ACAGGCGGTTCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACATCT 31903446 Query 24433 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 24492 | || || || || ||||| || || || || ||||||||| | ||||| | | | Sbjct 31903447 CTGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTT 31903506 Query 24493 GTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 24552 | |||||| | || || | || | ||| || || ||||| ||| ||| || | Sbjct 31903507 GGACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCGGCGA 31903566 Query 24553 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 24612 | || || | || || || || | ||| ||||| || || || || | ||| | | Sbjct 31903567 AGAAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTGAC 31903626 Query 24613 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 24672 || |||| ||| | ||| || ||||| | ||||||||||| || || || || || | Sbjct 31903627 CGACATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAATGAGGCTTCAGCTTTCTTGT 31903686 Query 24673 ACATATTCCAGATGTCAT-GATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTT 24731 |||| | |||||| | || ||||||||||||| || ||| || | | ||| |||| Sbjct 31903687 ACATCTCCCAGAT-TGATGGATATTGAATTGGGAACATACAGAAGCGGTCTGGGTTTTCA 31903745 Query 24732 GCAAGGA 24738 || |||| Sbjct 31903746 GCGAGGA 31903752 >seq17 Length=14661173 Score = 145 bits (160), Expect = 9e-30 Identities = 382/578 (66%), Gaps = 4/578 (1%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || |||||||| || || || || || |||| || || ||||| ||||| || | Sbjct 8256684 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTTGAAAAGGTTAAC 8256625 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 24253 || ||||| | ||||||||||| | ||||||||| | | |||| | || || || || Sbjct 8256624 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCG-CACAAAAACTCCCCGAGAAAAA 8256566 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTAT 24313 || ||||| || ||||| |||| || || || | ||| |||| | | || Sbjct 8256565 TATCCCTTCCACGCAAGCAAAAGCAACTAGCCTCTCCGCGAAACTCTCGCTCCCGTCAAT 8256506 Query 24314 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 24373 |||| ||||| |||||||| ||||| |||| || || ||||||| ||| Sbjct 8256505 CCACCGCAAGGCCCACCGTGCCTTCTTAGCCACACACGGCACCGTTTCGATAGCATGAAA 8256446 Query 24374 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 24433 ||| || || || | | ||| || | ||| || || | || |||||| ||||| || Sbjct 8256445 CAGACGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTC 8256386 Query 24434 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 24493 || || || || ||||| || || || |||||||| ||| | ||||| | | || Sbjct 8256385 TGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTG 8256326 Query 24494 TACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 24553 || ||| | || || | || | |||||| || || || ||| ||| || || Sbjct 8256325 GACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGAA 8256266 Query 24554 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATT 24613 || || | ||||| || || | || ||||| || || || || | ||| | Sbjct 8256265 GAAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGCG 8256206 Query 24614 GATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 24673 |||||| || | ||| || || || | |||||||| || ||||| || || || || Sbjct 8256205 GATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTA 8256146 Query 24674 CATATTCCAGATGTCAT-GATATTGAATTGGAAAAATA 24710 ||| | |||||| | || | || ||||| || || ||| Sbjct 8256145 CATCTCCCAGAT-TGATGGGTACTGAATGGGGAACATA 8256109 >seq5 Length=25802683 Score = 109 bits (120), Expect = 7e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| ||||| || | ||| |||||||| || || ||||| | ||| | | || | Sbjct 6278748 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCAAATGG 6278807 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 ||||| | ||||||||| || ||||| || |||||||| || || || | ||| | | Sbjct 6278808 TACGTTTTGATAGCTGAATCAATATCATCTTTGTGAATTCCAACAGCAACCCTCATCAGC 6278867 Query 54545 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAA 54604 ||||||||||| ||||| || | ||| | | ||||| | ||||||| |||| | Sbjct 6278868 ATGTGCTGAGGCCTTTCCACAACCTTTCCTTGGACCTTCAGGAGGTAGGATCTTTCAAGG 6278927 Query 54605 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGT 54659 || || || ||||| || | || |||||| || || || || || | |||| Sbjct 6278928 GTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAGATGATCTCAGAGT 6278982 Score = 100 bits (110), Expect = 3e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | || | || || | ||| | || ||||||||||||| ||| || Sbjct 6278370 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCAACATTGGAACAATGCC 6278429 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| |||| ||||| ||||| ||||| |||||| ||||||| || || || Sbjct 6278430 ATTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCACGGATGTTGTGGGCAGA 6278489 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 || ||| || || ||||| |||| ||| | || || || || |||||||| || Sbjct 6278490 TACACCGATTCCTCCTGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATAT 6278549 Query 54364 GCCCTCTATACTATCATCCATCATG 54388 || || ||||||||||| ||||| Sbjct 6278550 TCCTTCAATACTATCATCTTTCATG 6278574 Score = 84.2 bits (92), Expect = 3e-11 Identities = 124/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 |||||||| || | ||||||| | |||||| || | ||||||| || |||| || Sbjct 20778376 TCTCTTTCATACTGAGTATACAGTTTTTCAAATTCTTGTCCCCAACAATCAGCCAAACCT 20778317 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATC-CTTC--ACTCGTTTCATA 54040 ||| ||| || || | ||| ||||| | |||||| | || |||| || ||| Sbjct 20778316 GGAGCCTCACTAGGGCAAAACAAAGACCATTT---GTCATCACCTCGAACTCTTTCCATG 20778260 Query 54041 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTC 54093 ||||||||||||||||||||||| | |||| |||| | || |||||| || Sbjct 20778259 AAGAGATCAGGAATCCAAAGAGCAAGGAATAAGTCTCGAGCTCGATGTTCTTC 20778207 >seq7 Length=15101417 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| ||||| | || | || || | ||| | || | ||||||||||| ||| || Sbjct 5425448 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCAACATTGGAACAATGCC 5425507 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 ||| |||| ||||| || || ||||| |||||| ||||||| || || || || Sbjct 5425508 ATTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 5425567 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 || ||| || || || || |||| ||| | || || || || |||||||| || Sbjct 5425568 TACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATAT 5425627 Query 54364 GCCCTCTATACTATCATCCATCATG 54388 || || ||||||||||| ||||| Sbjct 5425628 TCCTTCAATACTATCATCTTTCATG 5425652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593702942298720