Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq7 104 2e-17 seq1 89.7 4e-13 seq16 86.0 5e-12 seq11 82.4 7e-11 >seq7 Length=15101417 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || ||||| || || ||||||||| || || | | Sbjct 1458664 ATGCAGATTTTCGTGAAGACTTTGACTGGGAAGACCATTACCTTGGAGGTAGAGAGCTCT 1458605 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| |||||| || ||||| || | ||| ||||||| Sbjct 1458604 GACACCATCGATAATGTCAAGGCAAAAATCCAGGACAAAGAGGGCATCCCCCCAGATCAA 1458545 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| ||||| || || || ||| ||| |||| || ||||| Sbjct 1458544 CAGAGGCTTATCTTTGCTGGCAAGCAGCTAGAGGATGGGCGCACTCTGGCTGACTACAAC 1458485 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||| |||||||||||| ||||| | || || || ||||| Sbjct 1458484 ATCCAGAAGGAGTCTACTCTTCACTTGGTGCTGCGCTTGCGTGGAGG 1458438 >seq1 Length=48367220 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| ||| | || || |||||||||||| ||| || | | Sbjct 25979872 ATGCAGATTTTTGTCAAGACACTCACTGGAAAAACCATTACCTTGGAAGTCGAGAGCTCT 25979813 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| |||||| ||||| || ||| | || ||| || Sbjct 25979812 GATACAATTGACAATGTCAAGGCCAAAATTCAGGATAAGGAGGGTATCCCACCAGACCAG 25979753 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||||| | |||||||| || || || ||||| ||| |||| |||| ||||||||| Sbjct 25979752 CAAAGGTTGATCTTTGCTGGAAAGCAGCTGGAGGATGGACGAACTTTGGCAGATTACAAT 25979693 Query 29142 ATTCAGAAGGAATCTACTCTTCAC 29165 || |||||||| || ||||| ||| Sbjct 25979692 ATCCAGAAGGAGTCGACTCTGCAC 25979669 >seq16 Length=14134809 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 |||||| || || || |||||||| || || || || |||||| | || | || || Sbjct 6733655 AGATCAGCAGAGGCTAATCTTTGCAGGGAAGCAGCTAGAAGATGGAAGGACCCTTGCTGA 6733596 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||| |||||||| ||||| ||||||||||| ||||| | || ||| |||||||| Sbjct 6733595 TTATAATATTCAAAAGGAGTCTACTCTTCATCTGGTGCTGCGTTTAAGAGGAGGG 6733541 >seq11 Length=18885544 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGA-ACCCGC 29020 ||||| |||||| |||| || ||||| || || |||||||| ||| || | | || Sbjct 145362 ATGCAGATATTCGTCAAGACCTTGACCGGGAAGACCATTACTCTCGAGGTCGAGAGCAGC 145421 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | | ||||| ||||||| || || ||||| | || ||| || Sbjct 145422 -GACACCATCGACAACGTTAAGGCAAAAATTCAAGACAAGGAAGGAATCCCACCAGACCA 145480 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||| | | ||||| || || |||||||| || ||| ||| | || ||||| || Sbjct 145481 ACAACGTTTGATCTTCGCTGGGAAACAACTTGAGGATGGTCGGACTCTAGCTGATTATAA 145540 Query 29141 TATTCAGAAGGAATCTACTCTTCA 29164 |||||||||||| || || ||||| Sbjct 145541 TATTCAGAAGGAGTCGACCCTTCA 145564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428322876052670