Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq6 125 1e-23 seq17 122 1e-22 seq1 107 3e-18 seq7 98.7 2e-15 seq11 95.1 2e-14 seq2 89.7 8e-13 seq16 87.8 3e-12 >seq6 Length=26894541 Score = 125 bits (138), Expect = 1e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || ||||| |||||||| |||||| | || | || Sbjct 10380422 ATGCAAATCTTCGTCAAAACCCTAACCGGCAAAACCATAACTCTTGAAGTCGAGAGTTCC 10380481 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| || |||| || |||||||| ||||||||||| || || |||||| Sbjct 10380482 GATACTATTGACAACGTAAAGGCCAAGATTCAAGACAAAGAAGGTATCCCTCCGGATCAA 10380541 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| |||||||| || ||||||||||||||| || | || | | ||||||||| Sbjct 10380542 CAGAGGCTAATTTTTGCTGGGAAACAATTAGAGGATGGTAGGACCCTTGCGGATTATAAT 10380601 Query 124719 ATTCAAAAAGAATCAAC 124735 || ||||| || || || Sbjct 10380602 ATCCAAAAGGAGTCCAC 10380618 Score = 118 bits (130), Expect = 2e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || ||||| || || || ||| | || |||| ||| Sbjct 10380878 ATGCAGATCTTTGTCAAGACTCTCACAGGGAAGACCATCACTCTTGAAGTTGAGAGCTC- 10380936 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || || | ||| || ||||| ||||| |||||||| ||||| || || Sbjct 10380937 TGATACGATAGACAACGTGAAAGCCAAGATTCAGGATAAGGAAGGTATTCCACCGGACCA 10380996 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || |||||||| ||||| || || |||||||||||| | | || | | ||||| || Sbjct 10380997 GCAGAGGCTTATATTTGCTGGGAAGCAATTAGAGGATGGGAGGACTCTTGCGGATTACAA 10381056 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||| || || || ||| | ||| | || | ||| | ||||||||| Sbjct 10381057 TATTCAGAAGGAGTCTACTCTCCATCTCGTGCTCCGTCTTCGAGGTGGT 10381105 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | || || || ||||||||||| |||||| | || | || | Sbjct 10380194 ATGCAGATCTTCGTGAAAACCCTGACAGGCAAAACCATAACTCTTGAAGTCGAGAATTCT 10380253 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 |||||||| || | ||| ||||| ||||| ||||||||||| || |||||||| Sbjct 10380254 GATACAATCGACAACGTCAAAGTCAAAATCCAAGACAAAGAAGGTATCCCTCCTGATCAG 10380313 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | || ||||| || || |||||| | ||||| | || || | | ||||| || Sbjct 10380314 CAACGCCTGATTTTCGCTGGCAAACAACTCGAGGACGGCCGTACCCTTGCCGATTACAAC 10380373 Query 124719 ATTCAAAAAGAATCAAC 124735 || ||||| ||||| || Sbjct 10380374 ATCCAAAAGGAATCCAC 10380390 >seq17 Length=14661173 Score = 122 bits (134), Expect = 1e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| ||||| ||| | ||| |||| | Sbjct 1747209 ATGCAGATCTTTGTGAAGACTCTTACTGGCAAGACTATCACTTTGGAGGTTGAGAGTTCT 1747268 Query 124599 GATACAATTTCTAATTTAAA-ACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| ||| | || ||| || || || || || ||||| || ||||| || || Sbjct 1747269 GACACAATTGACAATGTGAAGACA-AAGATCCAGGACAAGGAAGGGATCCCACCGGACCA 1747327 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | |||||||| |||||||| | || ||| | | || | | || ||||| Sbjct 1747328 GCAAAGGTTGATTTTTGCTGGAAAACAGCTTGAAGATGGAAGGACCCTTGCTGACTATAA 1747387 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||| || ||||| ||| |||||||||| | ||| | || ||||| || Sbjct 1747388 TATTCAGAAGGAATCTACTCTGCATTTGGTGCTCCGTCTGCGCGGTGGGAT 1747438 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | ||||| | || || || || || || | ||| | || ||| Sbjct 4943049 ATGCAAATTTTTGTGAAGACTTTGACTGGGAAGACCATCACCTTGGAGGTGGAGAGCTCC 4942990 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| |||| | || ||||| ||||||||||| || || || || || || Sbjct 4942989 -GACACCATTGATAATGTCAAGGCTAAAATCCAAGATAAAGAGGGCATCCCTCCAGACCA 4942931 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| ||||| || ||||| || || ||| | |||||| | || || | | ||||| || Sbjct 4942930 ACAGAGGCTCATCTTTGCTGGCAAGCAACTTGAGGATGGGCGCACTCTCGCTGATTACAA 4942871 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | |||||||| | || | || |||||||| Sbjct 4942870 CATCCAGAAGGAGTCCACCCTTCATTTGGTGCTTCGCCTCCGTGGTGGTAT 4942820 >seq1 Length=48367220 Score = 107 bits (118), Expect = 3e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| ||||||| | || || || || || || | ||| | || ||| Sbjct 25980100 ATGCAAATTTTTGTAAAGACTTTGACTGGGAAGACCATCACGTTGGAGGTCGAGAGCTC- 25980042 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || ||||| || ||||| ||||| || ||||| || || Sbjct 25980041 TGACACCATTGACAATGTCAAGGCTAAAATCCAGGATAAGGAAGGAATCCCACCAGACCA 25979982 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||||||||||||||| || |||||| | |||||| | || || | | || || || Sbjct 25979981 ACAAAGGCTTATTTTTGCTGGTAAACAACTTGAGGATGGACGGACCCTTGCTGACTACAA 25979922 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||| || | || ||||| | || | |||| ||||| Sbjct 25979921 CATTCAGAAGGAATCCACCCTCCACTTGGTGCTTCGACTGAGAGGCGGTAT 25979871 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | ||||| || || ||||| || || || | ||| | ||| | Sbjct 44859905 ATGCAAATCTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCT 44859964 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| |||| || || || || || || || || ||||| || || Sbjct 44859965 GACACTATTGATAATGTAAAGGCCAAGATCCAGGACAAGGAGGGGATCCCACCAGACCAG 44860024 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || |||||||||||||| || || || | |||||| | || || | | || || || Sbjct 44860025 CAGAGGCTTATTTTTGCTGGCAAGCAGCTTGAGGATGGCCGTACCCTTGCCGACTACAAC 44860084 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || | |||||||| | || || ||||||| || Sbjct 44860085 ATTCAGAAGGAGTCTACCCTTCATTTGGTGCTCCGATTGAGAGGTGGCAT 44860134 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| ||||||| || || ||||| || || || | || | || ||| Sbjct 25980556 ATGCAGATCTTTGTAAAGACTCTCACTGGCAAGACAATTACCTTGGAAGTGGAGAGCTCG 25980497 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| ||| | || || || ||||||||||||||||| || || || || Sbjct 25980496 -GACACAATTGACAATGTCAAGGCCAAGATCCAAGATAAAGAAGGTATCCCTCCAGACCA 25980438 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| || ||||| || || ||| | ||||| |||| || | | || ||||| Sbjct 25980437 GCAGAGGCTCATCTTTGCTGGGAAGCAACTTGAGGACGGTCGCACCCTTGCCGACTATAA 25980378 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | || ||||| | || | |||||||| || Sbjct 25980377 CATCCAGAAGGAGTCCACCCTACACTTGGTGCTCCGACTTCGAGGTGGCAT 25980327 >seq7 Length=15101417 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| || || ||||| || || || | || |||| ||| | Sbjct 1458892 ATGCAGATTTTTGTTAAGACCCTCACTGGCAAGACAATCACCTTGGAAGTTGAGAGCTCA 1458833 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| ||| | || || || || || || |||||||| || || || || Sbjct 1458832 -GACACAATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCGGACCA 1458774 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| ||||| || | |||||| | || || | | |||||||| Sbjct 1458773 GCAAAGGTTGATCTTTGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTTGCTGATTATAA 1458714 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | |||||||| | ||| | ||||||||||| Sbjct 1458713 CATCCAGAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTTCGAGGTGGTAT 1458663 >seq11 Length=18885544 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | ||||| ||||| || || ||||| || | ||| | || |||| Sbjct 145590 ATGCAGATTTTTGTGAAGACCCTAACCGGAAAGACTATTACGCTGGAGGTGGAGAGCAGC 145649 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || || | || ||| ||||| || || || || || ||||| || || Sbjct 145650 -GACACCATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGGATCCCACCGGACCA 145708 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||||| || ||||| || || || || |||||| | | || || | |||||||| Sbjct 145709 GCAAAGGCTGATCTTTGCTGGGAAGCAGTTGGAGGATGGAAGGACTTTGGCTGATTATAA 145768 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || ||||| || ||| | || | || ||||| | || ||||| || Sbjct 145769 TATCCAGAAAGAGTCTACTCTTCACCTTGTCTTACGCCTTCGCGGTGGCAT 145819 Score = 87.8 bits (96), Expect = 3e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| ||||| | ||||| | || || || || || ||| | ||| | || |||| Sbjct 145362 ATGCAGATATTCGTCAAGACCTTGACCGGGAAGACCATTACTCTCGAGGTCGAGAGCAGC 145421 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || || || || |||| || ||||||||||| || ||||| || ||||| || | Sbjct 145422 -GACACCATCGACAACGTTAAGGCA-AAAATTCAAGACAAGGAAGGAATCCCACCAGACC 145479 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||| | | || || || || |||||| | |||||| |||| || ||| ||||||| Sbjct 145480 AACAACGTTTGATCTTCGCTGGGAAACAACTTGAGGATGGTCGGACTCTAGCTGATTATA 145539 Query 124717 ATATTCAAAAAGAATCAAC 124735 ||||||| || || || || Sbjct 145540 ATATTCAGAAGGAGTCGAC 145558 >seq2 Length=23562801 Score = 89.7 bits (98), Expect = 8e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 124627 TTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAAT 124686 |||| || || ||||| || || |||||||| ||||| | |||||||| || ||||||| Sbjct 4215788 TTCAGGACAAGGAAGGCATCCCTCCTGATCAGCAAAGATTGATTTTTGCTGGTAAACAAT 4215729 Query 124687 TAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGG 124746 |||| ||| | ||||| | | ||||| ||||| || || || || || | || |||| Sbjct 4215728 TAGAAGATGGGCGAACTCTTGCTGATTACAATATCCAGAAGGAGTCGACGCTTCACTTGG 4215669 Query 124747 TTTT 124750 |||| Sbjct 4215668 TTTT 4215665 >seq16 Length=14134809 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||| || | ||||| || || || ||||| || ||||| || |||||||| || Sbjct 6733684 AAGATTCAGGACATGGAAGGAATCCCTCCAGATCAGCAGAGGCTAATCTTTGCAGGGAAG 6733625 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || |||| ||| | | || | | ||||||||||||||||| || || ||| | ||| Sbjct 6733624 CAGCTAGAAGATGGAAGGACCCTTGCTGATTATAATATTCAAAAGGAGTCTACTCTTCAT 6733565 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 |||| | |||||| |||| || || Sbjct 6733564 CTGGTGCTGCGTTTAAGAGGAGGGAT 6733539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755432259795200