Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq2 113 7e-20 seq5 109 8e-19 seq6 107 3e-18 seq17 102 1e-16 seq1 86.0 9e-12 >seq2 Length=23562801 Score = 113 bits (124), Expect = 7e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || || ||||| || | || || || || ||||| ||||| Sbjct 4215647 GTTCCTCCCCTGAGCCTCAAAACCAAGTGAAGCGTCGACTCCTTCTGGATATTGTAATCA 4215706 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||||| | ||| ||||||||||| |||||||||||||||||||||||||| ||| Sbjct 4215707 GCAAGAGTTCGCCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGCTGATCAGGA 4215766 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| || || || Sbjct 4215767 GGGATGCCTTCCTTGTCCTG 4215786 >seq5 Length=25802683 Score = 109 bits (120), Expect = 8e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || ||||| || || |||| || | ||| || || || || || ||||| Sbjct 21066374 GTTCCTCCCCTAAGCCTCAAAACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCA 21066315 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||| | | ||| ||||||||||| |||||||||||||||||||||||||| ||| Sbjct 21066314 GCAAGAGTACGTCCATCTTCTAATTGTTTACCAGCAAAAATCAATCTTTGCTGATCAGGA 21066255 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| || || || Sbjct 21066254 GGGATGCCTTCCTTGTCCTG 21066235 Score = 100 bits (110), Expect = 4e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| ||||| || ||||| ||||| || | || || || || || |||||||| Sbjct 7051114 GTTCCTCCTCTGAGCCTTAAAACCAAGTGAAGTGTTGACTCCTTCTGAATGTTATAATCA 7051173 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| || | || ||| || ||||| || |||||||||||||| || |||||||| ||| Sbjct 7051174 GCAAGTGTCCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAACCTCTGCTGATCTGGA 7051233 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || ||||| || || || Sbjct 7051234 GGGATGCCTTCCTTGTCCTG 7051253 >seq6 Length=26894541 Score = 107 bits (118), Expect = 3e-18 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 ||||||||||| | ||| || || | ||| ||||||||||| ||||||||||| | || Sbjct 10380603 ATATTATAATCCGCAAGGGTCCTACCATCCTCTAATTGTTTCCCAGCAAAAATTAGCCTC 10380544 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTA 146215 || ||||||||||| || |||||||| ||||| |||| Sbjct 10380543 TGTTGATCCGGAGGGATACCTTCTTTGTCTTGAATCTTGGCCTTTACGTTGTCAATAGTA 10380484 Query 146216 TCTGAACTTTCTACTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGC 146275 || ||||| || ||||| || || || ||||| || |||| ||||| | ||| |||||| Sbjct 10380483 TCGGAACTCTCGACTTCAAGAGTTATGGTTTTGCCGGTTAGGGTTTTGACGAAGATTTGC 10380424 Query 146276 AT 146277 || Sbjct 10380423 AT 10380422 Score = 98.7 bits (108), Expect = 1e-15 Identities = 145/211 (69%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 146068 TACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCAT 146126 ||||| ||| | |||||| || ||| || || |||||||||| |||||| || | ||| | Sbjct 10380859 TACCAGATGCAGAGTAGACTCCTTTTGA-ATGTTATAATCTGCAAGAGTCCTCCCATCTT 10380801 Query 146127 CTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTT 146186 | || || || || ||||| || | || ||||||||||| ||||| ||||| || || | Sbjct 10380800 CCAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCCGGGGGAATCCCTTCCTTGTCCT 10380741 Query 146187 GNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTT 146246 | ||||| || ||||| || || || |||||||| | Sbjct 10380740 GAATCTTGGCTTTAACGTTATCAATTGTATCAGAGCTTTCAACCTCAAGCGTGATTGTAT 10380681 Query 146247 TACCTGTTAATGTTTTAATGAATATTTGCAT 146277 | || ||||| || |||| ||| |||||||| Sbjct 10380680 TTCCAGTTAAAGTCTTAACGAAGATTTGCAT 10380650 >seq17 Length=14661173 Score = 102 bits (112), Expect = 1e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | ||| |||||||| ||||| || |||| ||| || | | ||| || Sbjct 1747873 ACCAAATGCAGAGTCGATTCTTTCTGAATATTGTAGTCTGCAAGGGTGCGACCATCCTCC 1747814 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||||||||||| |||||||| ||||| || || ||||| |||||||| Sbjct 1747813 AGCTGTTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGTGGGATCCCTTCCTTATCTTG 1747755 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | ||||||||| || |||||||| || | ||| || || | ||| || Sbjct 1747417 ACCAAATGCAGAGTAGATTCCTTCTGAATATTATAGTCAGCAAGGGTCCTTCCATCTTCA 1747358 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||||||||||| |||||||| ||||| || || ||||| || || || Sbjct 1747357 AGCTGTTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGTGGGATCCCTTCCTTGTCCTG 1747299 >seq1 Length=48367220 Score = 86.0 bits (94), Expect = 9e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 146096 ATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTT 146155 || |||||||| | |||||| | | ||| || | |||||| |||||||||||||| ||| Sbjct 25980603 ATGTTATAATCAGCAAGAGTGCGTCCATCCTCAAGTTGTTTGCCAGCAAAAATCAACCTT 25980662 Query 146156 TGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| || || || ||||| ||||| || Sbjct 25980663 TGCTGATCTGGGGGGATCCCTTCCTTATCCTG 25980694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743503034682880