Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 seq12 95.1 8e-15 seq11 95.1 8e-15 seq15 91.5 1e-13 seq2 91.5 1e-13 seq17 84.2 1e-11 seq14 84.2 1e-11 >seq1 Length=48367220 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| || | ||| || ||||| ||||||||||||| || |||| | || Sbjct 44860116 AGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCGGCAAGGGTACGGCCATCC 44860057 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || ||||| |||| ||||||||| || | | ||||||||| Sbjct 44860056 TCAAGCTGCTTGCCAGCAAAAATAAGCCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCC 44859997 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||||| || | || | || | ||| || || | |||||||| Sbjct 44859996 TGGATCTTGGCCTTTACATTATCAATAGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTC 44859937 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| |||||||| || || ||||| |||||| Sbjct 44859936 TTGCCAGTGAGAGTCTTGACGAAGATTTGCATC 44859904 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | |||||||| ||| | || || ||||| ||||||||||| | Sbjct 44860816 TCCTCCACGGAGACGCAGCACCAAGTGAAGGGTTGACTCCTTCTGAATGTTGTAGTCAGC 44860757 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | | || || | |||||| || || ||||| | || ||||||||| ||| Sbjct 44860756 AAGAGTCCTCCCATCTTCAAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCTGGGGG 44860697 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | || |||||||| ||||| ||||| | || | | || | ||| | || | Sbjct 44860696 GATGCCTTCCTTGTCTTGGATCTTG-GCTTTCACATTGTCAATGGTATCAGAGCTCTCCA 44860638 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| |||||||| || || ||||| || ||||||||||||||||| Sbjct 44860637 CCTCCAAGGTGATGGTCTTTCCTGTGAGGGTCTTCACAAAGATCTGCAT 44860589 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || ||| ||||| ||||||||||| | || || | || Sbjct 44860344 AGCACCAAGTGGAGTGTGGATTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGTCCATCC 44860285 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || || || |||| ||||||||| ||| | || ||||||||| Sbjct 44860284 TCAAGCTGCTTGCCGGCAAATATCAGCCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 44860225 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | | || | || | || || |||| ||||| || Sbjct 44860224 TGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAACTCTCCACCTCCAAGGTGATTGTC 44860165 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || || |||||||||||||| Sbjct 44860164 TTGCCAGTAAGGGTCTTAACAAAGATCTGCAT 44860133 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || ||| ||||| ||||||||||| | || ||| | || Sbjct 4826405 AGCACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAGTCTGCAAGTGTACGTCCATCT 4826464 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | || || || |||||||| || || |||||||| || | || |||||||| Sbjct 4826465 TCTAGTTGTTTTCCGGCGAAAATAAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCT 4826524 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| | || | | || | ||| | |||||||| || | || ||||| Sbjct 4826525 TGGAT-TTTGGCTTTGACATTGTCGATTGTATCTGAAGATTCGACCTCGAGGGTTATGGT 4826583 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | || ||||| ||||||||||| Sbjct 4826584 CTTCCCCGTCAAGGTCTTCACGAAGATCTGCAT 4826616 >seq12 Length=14929429 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | ||| || ||||| ||||||||||| | || ||| |||| Sbjct 11925752 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGTGTGCGGCCGTCC 11925811 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || ||||||||||| ||||| ||||| || | | |||||||| Sbjct 11925812 TCGAGCTGTTTTCCAGCGAAAATGAGACGCTGTTGGTCTGGTGGGATACCTTCCTTGTCT 11925871 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | || | | || | ||| | ||||| || || | || || || Sbjct 11925872 TGAATC-TTGGCTTTGACATTGTCGATTGTATCTGAGGATTCTACCTCGAGGGTTATTGT 11925930 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || | |||||||| |||||||||||| Sbjct 11925931 CTTGCCCGTCAAGGTTTTCACGAAGATCTGCATC 11925964 >seq11 Length=18885544 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || || ||||| ||||||||||| | || ||| | || Sbjct 16430223 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCC 16430164 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || || || | || ||||||||| ||| | || |||||||| Sbjct 16430163 TCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 16430104 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | || | ||| | || || |||| |||||||| Sbjct 16430103 TGTATCTTGGCCTTGACATTATCAATGGTATCAGAGCTCTCAACCTCCAAAGTGATGGTC 16430044 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || ||||||||||||||||| Sbjct 16430043 TTTCCAGTGAGGGTCTTCACAAAGATCTGCAT 16430012 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 34193 GTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCT 34252 || || || ||||| || ||||| |||| || ||| | || || | |||||| || Sbjct 145330 GTGCTCTCCTTCTGAATATTGTAATCGGCCAAAGTTCGGCCATCTTCGAGCTGCTTTCCA 145271 Query 34253 GCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT 34312 ||||| || || ||||| || || || | || |||||||| ||||| ||| Sbjct 145270 GCGAATATTAGACGCTGTTGATCCGGTGGGATGCCTTCCTTGTCTTGAATCTTGGCCTTG 145211 Query 34313 AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTT 34372 | | | | || | ||| | || || |||| |||||||| ||||||||||| ||| Sbjct 145210 ACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGAGTGATGGTCTTGCCGGTGAGGGTT 145151 Query 34373 TTCACAAAGATCTGCAT 34389 ||||| ||||||||||| Sbjct 145150 TTCACGAAGATCTGCAT 145134 >seq15 Length=15134944 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 34202 TTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATG 34261 ||||| || ||||| || | || |||| | || |||| |||||| || || || || Sbjct 555838 TTCTGGATATTGTAATCAGCAAGGGTACGGCCATCTTCCAGCTGCTTCCCAGCAAAGATC 555897 Query 34262 AGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGC 34320 || | |||||| || || | | |||||||| || ||| ||||| | || | | Sbjct 555898 AGTCTCTGCTGATCAGGAGGAATCCCTTCCTTGTCCTGGAT-TTTGGCTTTGACATTGTC 555956 Query 34321 TATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAA 34380 || | ||| | |||||||| || | |||||||| ||||| || || ||||||||||| Sbjct 555957 AATAGTATCACTAGATTCGACCTCAAGAGTGATGGTCTTGCCAGTCAGGGTTTTCACAAA 556016 Query 34381 GATCTGCAT 34389 ||||||||| Sbjct 556017 GATCTGCAT 556025 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | ||| || ||||| ||||||||||| | || |||| |||| Sbjct 12612268 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGTGTACGGCCGTCC 12612327 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || ||||||||||| ||||| || || || | | |||||||| Sbjct 12612328 TCGAGCTGTTTTCCAGCGAAAATGAGACGCTGTTGATCCGGTGGGATACCTTCCTTGTCT 12612387 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | || | | | | || | || || || || | || || || Sbjct 12612388 TGAATC-TTGGCTTTGACATTGTCAACAGTGTCTGAGGACTCAACCTCGAGGGTTATTGT 12612446 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || | |||||||| |||||||||||| Sbjct 12612447 CTTGCCCGTCAAGGTTTTCACGAAGATCTGCATC 12612480 >seq2 Length=23562801 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| || ||||| ||||||||||| | ||| ||| | || Sbjct 14982836 AGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGGCCATCC 14982895 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || ||||||||||| ||||| ||||| || | || ||||||||| Sbjct 14982896 TCGAGCTGTTTTCCAGCGAAAATGAGACGCTGTTGGTCTGGTGGGATGCCCTCCTTGTCT 14982955 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||| || ||||| | || | | |||| || | || || || || | || || || Sbjct 14982956 TGAATC-TTGGCTTTGACATTGTCGATCGTGTCTGAGGACTCAACCTCGAGGGTTATTGT 14983014 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || || | |||||||| |||||||||||| Sbjct 14983015 CTTACCCGTCAAGGTTTTCACGAAGATCTGCATC 14983048 >seq17 Length=14661173 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || ||| ||||| ||||||||||| | || ||| | || Sbjct 4943066 AGCACCAAGTGAAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCTAGAGTACGTCCATCC 4943125 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || || ||||||| ||| ||||| || | || |||||| || Sbjct 4943126 TCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGAGGGATGCCCTCCTTATC- 4943184 Query 34298 GCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGG 34355 || ||||| ||| | || | || | |||| || || |||| ||||||| Sbjct 4943185 -CTGGATTTTGGCCTTGACATTATCAATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGG 4943243 Query 34356 TTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || || || | ||| || |||||||||||||| Sbjct 4943244 TCTTCCCAGTCAAAGTCTTGACAAAGATCTGCAT 4943277 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||| || | |||| ||| ||||| || || ||||| | Sbjct 1747435 CCACCGCGCAGACGGAGCACCAAATGCAGAGTAGATTCCTTCTGAATATTATAGTCAGCA 1747376 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || | | || || | ||| || || || ||||| | || |||||||| | ||| Sbjct 1747375 AGGGTCCTTCCATCTTCAAGCTGTTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGTGGG 1747316 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| |||||| ||| | || | | || | || | || || Sbjct 1747315 ATCCCT-TCCTTGTCCTGGATCTTTGTCTTCACATTGTCAATTGTGTCAGAACTCTCAAC 1747257 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| ||||| || ||||| || ||||| |||||||||||||||||| Sbjct 1747256 CTCCAAAGTGATAGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCATC 1747208 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| || | ||| ||||||||| || |||||||| | Sbjct 1747891 CCACCACGCAGACGGAGCACCAAATGCAGAGTCGATTCTTTCTGAATATTGTAGTCTGCA 1747832 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || || | || |||| ||| || || || ||||| | || |||||||| | ||| Sbjct 1747831 AGGGTGCGACCATCCTCCAGCTGTTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGTGGG 1747772 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||| || |||||| ||| | | | || | ||| | || || Sbjct 1747771 ATCCCT-TCCTTATCTTGGATCTTTGTCTTGACGTTATCAATAGTATCCGAGCTCTCCAC 1747713 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| ||||| ||||| || ||||| ||||||||||| ||||||||| Sbjct 1747712 CTCCAAGGTGATAGTTTTTCCAGTGAGGGTTTTCACAAAAATCTGCATC 1747664 >seq14 Length=17716633 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || | ||| | ||||||| ||| | ||| || ||||| ||||||||||| | Sbjct 8228905 TCCACCCCTCAGGCGAAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGC 8228964 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || |||| || | || || || ||||||||||| ||||| ||||| || Sbjct 8228965 GAGGGTGCGACCGTCCTCGAGTTGTTTCCCAGCGAAAATGAGACGCTGTTGGTCTGGAGG 8229024 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | || ||||||||| ||| || ||||| | || | | || | || | || || | Sbjct 8229025 GATGCCCTCCTTGTCCTGAATC-TTGGCTTTGACATTGTCGATTGTGTCTGATGACTCAA 8229083 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 | || | || ||||| || || || | || ||||| |||||||||||| Sbjct 8229084 CCTCGAGGGTTATGGTCTTTCCCGTCAAGGTCTTCACGAAGATCTGCATC 8229133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323062101275840