Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq17 100 3e-16 seq1 98.7 1e-15 seq10 82.4 7e-11 >seq17 Length=14661173 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 ||||| |||||||||||||| || ||||||| || | ||||||||||| ||||| Sbjct 8256684 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTTGAAAAGGTTAAC 8256625 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 || |||||||| || || ||||||||||||||||| ||| || || || || ||| Sbjct 8256624 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 8256565 Query 14324 ATTCCCTCAACTGCAGCAAACGC 14346 || || || || |||||| || Sbjct 8256564 ATCCCTTCCACGCAAGCAAAAGC 8256542 >seq1 Length=48367220 Score = 98.7 bits (108), Expect = 1e-15 Identities = 366/563 (65%), Gaps = 17/563 (3%) Strand=Plus/Plus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 |||||| |||||||||||||| || ||||||| || | ||||| || || || | Sbjct 31903148 ACACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAG 31903207 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 14322 |||||||| | || |||||||||||||||||||| ||| || || || || || Sbjct 31903208 GCCTGGCATTAGCCCACGTTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAA 31903267 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC---AAACGATGCTTTTTTGTT 14379 ||| || || || |||||| || ||||| | ||||| |||| | | | | | Sbjct 31903268 TATCCCTTCCACGCAAGCAAAAGCAATTAACC--TCTCCGCAAAACTCT-CGCCTCCG-T 31903323 Query 14380 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14439 || ||||| | |||||| || | || || | | | || || ||||| || Sbjct 31903324 CG--ATCCACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGC 31903381 Query 14440 ATTAAATAAATGTTCCTTCTCTTTAG--TACTTGAAATGTATGTAT-CAATAAGTAAG-C 14495 || ||| | | | |||||| ||| | |||| ||||| || | ||| || ||| | Sbjct 31903382 ATGAAACAGGCGGTTCTTCTCAGTAGAATCCTTG--ATGTAGGTCTCCAACAA--AAGAC 31903437 Query 14496 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14555 | ||||| || ||||| || || || || || ||||| || || || ||| | || | Sbjct 31903438 TGTACATCTCTGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCT 31903497 Query 14556 CTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14615 | || ||| || ||| || | |||| | ||| || || || |||||| Sbjct 31903498 CCGAGACTTGGACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAG 31903557 Query 14616 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTT 14675 || || || || || | | || ||| |||| || ||| ||| | || |||| Sbjct 31903558 AGGCGGCGAAGAAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTT 31903617 Query 14676 TCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAG 14735 ||| | | | ||| ||| ||||| || || ||| | |||||||| || ||| Sbjct 31903618 CCCAGTGACCGACATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAATGAGGCTTCAG 31903677 Query 14736 CTTTTTTATACATTACCCATATT 14758 |||| || ||||| |||| ||| Sbjct 31903678 CTTTCTTGTACATCTCCCAGATT 31903700 >seq10 Length=21538349 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/102 (78%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| |||||||| || |||||||||||| || |||||||| || ||||| || Sbjct 3696989 CAAGCAAAGTCACAATGTAGCCCCTCATCTCTAGATATTAGTTCGTTCGAGAATGTCAAA 3696930 Query 14264 CCTGGCATCAATCCTCGtttttttAACC--AAAATATTGCAG 14303 |||||||||| |||| ||||| | || ||||| ||||| Sbjct 3696929 ACTGGCATCAAGCCTCTCTTTTTAAGCCAGAAAATGGTGCAG 3696888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482330442289520