Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 >seq1 Length=48367220 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| ||| |||| ||| || || ||||| || |||||||||||||| || | || Sbjct 25979883 AGTCGAAGCACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCGT 25979942 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | ||| || | |||||| || ||| | ||||| |||||||| || || | |||||| Sbjct 25979943 CCATCCTCAAGTTGTTTACCAGCAAAAATAAGCCTTTGTTGGTCTGGTGGGATTCCTTCC 25980002 Query 18228 TTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTG 18287 ||||| |||| |||||| | ||| |||||| | |||| || | ||| Sbjct 25980003 TTATCCTGGATTTTAGCCTTGACATTGTCAATGGTGTCAGAGCTCTCGACCTCCAACGTG 25980062 Query 18288 ATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || ||||| || ||||||||||||||||| Sbjct 25980063 ATGGTCTTCCCAGTCAAAGTCTTTACAAAAATTTGCAT 25980100 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 |||| ||| |||| ||| ||||| ||||| ||||||||||| ||||| || | || Sbjct 25980111 AGTCGAAGCACCAGGTGGAGTGTGGATTCCTTTTGAATGTTATAGTCAGCTAGAGTGCGT 25980170 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||||| ||| ||||| ||| |||| || || ||||| || ||| | ||| ||| Sbjct 25980171 CCATCTTCCAGTTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGGGGGATGCCCTCC 25980230 Query 18228 TTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGT 18286 || || |||| | || || || | ||| ||||||| | ||| || | ||| Sbjct 25980231 TTGTCCTGGATTT-TAGCTTTCACGTTATCAATAGTGTCAGAGCTCTCAACCTCCAAGGT 25980289 Query 18287 GATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| | || || ||||| || || ||||| || ||||| Sbjct 25980290 GATGGTCTTTCCAGTCAAAGTCTTAACAAAGATCTGCAT 25980328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379332377136930