Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq11 86.0 5e-12 >seq11 Length=18885544 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||||||||| || || ||||| ||||| || || || || |||| ||||| ||| Sbjct 145362 ATGCAGATATTCGTCAAGACCTTGACCGGGAAGACCATTACTCTCGAGGTCGAGAGCAGC 145421 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||||||| ||||||| | || ||||| | || ||||| Sbjct 145422 GACACCATCGACAACGTTAAGGCAAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAA 145481 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 |||||||| || | || || |||||||| || ||| |||| | ||||| | Sbjct 145482 CAACGTTTGATCTTCGCTGGGAAACAACTTGAGGATGGTCGGACTCTAGCTGATTATAAT 145541 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTG 25041 || ||||| ||| | || |||||| | ||| Sbjct 145542 ATTCAGAAGGAGTCGACCCTTCATCTTGTG 145571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418291183426880