Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq17 89.7 5e-13 seq8 82.4 7e-11 >seq17 Length=14661173 Score = 89.7 bits (98), Expect = 5e-13 Identities = 374/585 (64%), Gaps = 4/585 (1%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 ||||| ||||||||||| | ||||| |||| || | || || ||||| ||||| Sbjct 8256684 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTTGAAAAGGTTAAC 8256625 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAAT 11749 || |||||||| || || ||||||| ||||||||| ||| ||| || || || ||| Sbjct 8256624 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 8256565 Query 11750 ATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATC 11809 || || ||||| ||||| || |||| || || | | || | | | ||| Sbjct 8256564 ATCCCTTCCACGCAAGCAAAAGCAACTAGCCTCTCCGCGAAACTCTCGCTCCCGTCAATC 8256505 Query 11810 CATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAAT 11869 || |||||| || ||||| || || || ||||| ||||| | ||| Sbjct 8256504 CACCGCAAGGCCCACCGTGCCTTCTTAGCCACACACGGCACCGTTTCGATAGCATGAAAC 8256445 Query 11870 AAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCT 11929 | | | | || || | ||| | | ||| || || | | | ||| ||||| ||| Sbjct 8256444 AGACGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTCT 8256385 Query 11930 GAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGT 11989 || || ||||| || || || || || ||||| || ||| || ||||| || || Sbjct 8256384 GAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTGG 8256325 Query 11990 ACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAA 12048 || || ||| ||| | | || | ||| || ||||| |||||| | || || Sbjct 8256324 ACCTCTTTCATGAAA-CGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGAA 8256266 Query 12049 AAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATC 12108 || || || | ||| || |||| || ||||| ||| | || ||||| | Sbjct 8256265 GAAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGCG 8256206 Query 12109 TAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATA 12168 | ||| || | ||| || || ||| | |||||||| ||| | | || || || Sbjct 8256205 GATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTA 8256146 Query 12169 CATTTTCCAGATATCAT-GATACTTAATAGGGAAAATAACGAACC 12212 ||| | |||||| | || | |||| ||| ||||| ||| ||||| Sbjct 8256145 CATCTCCCAGAT-TGATGGGTACTGAATGGGGAACATACAGAACC 8256102 >seq8 Length=18835763 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||| |||||||| | || ||||||||| |||||||||||| || ||||| || Sbjct 14364033 CAAGCAAAGTCACAATGCAGCCCCTCGTCTCTAGATATTAGTTCATTCGAGAATGTCAAA 14363974 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGC 11727 || |||||||| |||| ||||| | ||| || || || Sbjct 14363973 CCTGGCATCAAGCCTCTCTTTTTAAGCCAGAAAATGGC 14363936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468510076608160