Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4 116 4e-21 seq15 102 8e-17 seq6 100 3e-16 seq12 93.3 4e-14 seq7 93.3 4e-14 seq11 89.7 5e-13 seq1 87.8 2e-12 seq2 86.0 6e-12 >seq4 Length=23188140 Score = 116 bits (128), Expect = 4e-21 Identities = 151/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || ||||| || |||||| || || | |||||||||||||| || || | Sbjct 1307347 CTCCTTCTGAATATTGTAATCGGCCAAAGTCCGACCATCTTCGAGCTGTTTCCCGGCGAA 1307406 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG 139692 ||||| |||||| ||||| || || ||||| || ||||| ||| | || | ||| | Sbjct 1307407 GATCAAACGTTGTTGATCCGGTGGGATGCCCTCCTTGTCT-TGAATCTTGGCTTTGACGT 1307465 Query 139693 T-TCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751 | || | |||||| || ||||||||||| ||| | |||||||||||||| ||||| | Sbjct 1307466 TGTCGATGGTGTCGCTGCTCTCCACCTCAAGGGTTATAGTCTTGCCGGTCAAAGTTTTCA 1307525 Query 139752 CGAATATTTGCATAGCTTATGTTTT 139776 |||| || ||||| ||| | |||| Sbjct 1307526 CGAAGATCTGCAT--CTTTTTTTTT 1307548 Score = 100 bits (110), Expect = 3e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || ||||| ||||||||| || || | |||||||||||||| || ||| | Sbjct 1307119 CTCCTTCTGAATATTATAATCGGCCAAAGTCCGACCATCTTCGAGCTGTTTCCCGGCAAA 1307178 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCT 139691 |||| |||||| ||||| || || ||||| || || || ||| | || | || | | Sbjct 1307179 TATCAAACGTTGTTGATCCGGTGGGATGCCCTCCTTATC-TTGAATCTTGGCCTTGACGT 1307237 Query 139692 GTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751 || | |||||| || ||||||||||| ||| | ||||| || ||||| || || | Sbjct 1307238 TGTCGATGGTGTCGCTGCTCTCCACCTCAAGGGTAATGGTCTTCCCTGTCAAGGTCTTAA 1307297 Query 139752 CGAATATTTGCATAGCT 139768 | ||||| |||||| || Sbjct 1307298 CAAATATCTGCATACCT 1307314 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | || | ||||| |||||||||||||| || || || || | Sbjct 1306856 CCCCCTCGGAGACGGAGGACAAGGTGAAGGGTAGACTCTTTTTGGATATTGTAGTCAGCC 1306915 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||||||||| || || ||| |||||| ||||| ||||| || || Sbjct 1306916 AGAGTCCGGCCATCTTCGAGCTGCTTTCCGGCAAAGATCAAGCGTTGTTGATCAGGTGGG 1306975 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| | || | || | | || | |||||| || ||| || Sbjct 1306976 ATGCCCTCCTTGTC-TTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCTAC 1307034 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCT 139768 ||| | || | ||||| || ||||| || || || || || |||||| || Sbjct 1307035 CTCTAGAGTAATGGTCTTCCCTGTCAAGGTCTTCACAAAAATCTGCATACCT 1307086 >seq15 Length=15134944 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || || ||||| || || | ||| | ||| ||| Sbjct 12612271 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGTGTACGGCCGTCCTCG 12612330 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 |||||||| ||||| | || ||||| || ||||| || || || ||||| ||||| || Sbjct 12612331 AGCTGTTTTCCAGCGAAAATGAGACGCTGTTGATCCGGTGGGATACCTTCCTTGTC-TTG 12612389 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | ||| | | || || ||||| | || ||| ||||| | ||| | ||||| Sbjct 12612390 AATCTTGGCTTTGACATTGTCAACAGTGTCTGAGGACTCAACCTCGAGGGTTATTGTCTT 12612449 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| ||||| ||||| ||||| || ||||| Sbjct 12612450 GCCCGTCAAGGTTTTCACGAAGATCTGCAT 12612479 >seq6 Length=26894541 Score = 100 bits (110), Expect = 3e-16 Identities = 162/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| || | | || ||| | ||| | || || || ||||| ||||| |||||| Sbjct 10380420 CCGCCGCGAAGCCTCAGAACAAGGTGGAGTGTGGATTCCTTTTGGATGTTGTAATCGGCA 10380361 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| ||||| ||||| ||||| | ||||| ||||||||||| ||||| Sbjct 10380360 AGGGTACGGCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGGCGTTGCTGATCAGGAGGG 10380301 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| |||||| ||| | | || | ||| || | ||| || Sbjct 10380300 ATACCTTCTTTGTCTTGGATTTTGACTTTGACGTTGTCGATTGTATCAGAATTCTCGACT 10380241 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTT 139769 |||| || | || ||||| |||| ||||| ||||| || ||||| |||| Sbjct 10380240 TCAAGAGTTATGGTTTTGCCTGTCAGGGTTTTCACGAAGATCTGCAT-GCTT 10380190 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||||| ||||||| || | || | |||||||| ||||||||||||||||| Sbjct 10380876 CCGCCTCTCAAACGCAGTACCAGATGCAGAGTAGACTCCTTTTGAATGTTATAATCTGCA 10380817 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || ||| ||||| | ||| || || ||| |||| || | |||||||| || || Sbjct 10380816 AGAGTCCTCCCATCTTCCAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCCGGGGGA 10380757 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | |||| | | || | ||| || | | || || Sbjct 10380756 ATCCCTTCCTTGTC-CTGAATCTTGGCTTTAACGTTATCAATTGTATCAGAGCTTTCAAC 10380698 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | || || || || || || || ||||| |||||||| Sbjct 10380697 CTCAAGCGTGATTGTATTTCCAGTTAAAGTCTTAACGAAGATTTGCAT 10380650 >seq12 Length=14929429 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || ||||| || || ||||| || || | ||||| ||| ||| Sbjct 11925755 ACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGTGTGCGGCCGTCCTCG 11925814 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 |||||||| ||||| | || ||||| || || || || || || ||||| ||||| || Sbjct 11925815 AGCTGTTTTCCAGCGAAAATGAGACGCTGTTGGTCTGGTGGGATACCTTCCTTGTC-TTG 11925873 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | | || | ||| | | || | ||| || | || || ||||| | ||| | ||||| Sbjct 11925874 AATCTTGGCTTTGACATTGTCGATTGTATCTGAGGATTCTACCTCGAGGGTTATTGTCTT 11925933 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| ||||| ||||| ||||| || ||||| Sbjct 11925934 GCCCGTCAAGGTTTTCACGAAGATCTGCAT 11925963 >seq7 Length=15101417 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||| | ||| ||||| | || || || ||||| ||||||||||| Sbjct 1458894 CCACCTCTCAAACGTAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTATAATCAGCA 1458953 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | || || |||||||| |||||| |||||| | |||||||| || || Sbjct 1458954 AGGGTTCGTCCA-TCCTCAAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGGGG 1459012 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| || || ||| || ||| | | || | || || | | ||||| Sbjct 1459013 GATCCCTTCCTTATCCTGGATCTTGGCTTTCACATTATCAATAGTATCCGAGCTTTCCAC 1459072 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||||| || | ||||| || || |||||||| Sbjct 1459073 CTCAAGGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCAT 1459120 >seq11 Length=18885544 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 139573 CTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATA 139632 ||| || ||||| || |||||| || || | ||||||||||| || ||||| | Sbjct 145325 CTCCTTCTGAATATTGTAATCGGCCAAAGTTCGGCCATCTTCGAGCTGCTTTCCAGCGAA 145266 Query 139633 GATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCT 139691 || ||||| || ||||| || || |||||||| ||||| ||| | || | || | | Sbjct 145265 TATTAGACGCTGTTGATCCGGTGGGATGCCTTCCTTGTC-TTGAATCTTGGCCTTGACGT 145207 Query 139692 GTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTA 139751 || | |||||| || ||||||||| | || | ||||||||||| | ||||| | Sbjct 145206 TGTCGATGGTGTCGCTGCTCTCCACCTCCAGAGTGATGGTCTTGCCGGTGAGGGTTTTCA 145147 Query 139752 CGAATATTTGCAT 139764 |||| || ||||| Sbjct 145146 CGAAGATCTGCAT 145134 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | || || || | ||||| ||||||||||| || || |||||||| Sbjct 145817 GCCACCGCGAAGGCGTAAGACAAGGTGAAGAGTAGACTCTTTCTGGATATTATAATCAGC 145758 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || || || || | ||| || |||||| ||||||| | |||||| || || || Sbjct 145757 CAAAGTCCTTCCATCCTCCAACTGCTTCCCAGCAAAGATCAGCCTTTGCTGGTCCGGTGG 145698 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || ||||| ||| | || | || | | || | |||||| || ||||| Sbjct 145697 GATCCCCTCCTTGTC-CTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCA 145639 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||| ||||| | || || || || || ||||| Sbjct 145638 CCTCCAGCGTAATAGTCTTTCCGGTTAGGGTCTTCACAAAAATCTGCAT 145590 >seq1 Length=48367220 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTC 139614 || ||||| | || || || || |||||||| || || | ||| | || | ||||| Sbjct 4826408 ACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAGTCTGCAAGTGTACGTCCA-TCTTC 4826466 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 || ||||| || || | || ||||||||||| || || || |||||||| ||||| Sbjct 4826467 TAGTTGTTTTCCGGCGAAAATAAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTG 4826526 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 |||||| ||| | | || | ||| || | | || ||||| | ||| | ||||| Sbjct 4826527 GATTTTGGCTTTGACATTGTCGATTGTATCTGAAGATTCGACCTCGAGGGTTATGGTCTT 4826586 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCATAGCTTATGTTTT 139776 || ||||| || || ||||| || ||||| ||| || ||| Sbjct 4826587 CCCCGTCAAGGTCTTCACGAAGATCTGCATGTCTTCTGGTTT 4826628 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | |||| ||| | || |||||||| |||||||||||||| Sbjct 25980557 GCCACCTCTGAGACGAAGCACTAGGTGGAGGGTGGACTCTTTCTGAATGTTATAATCAGC 25980616 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | |||| || | || || || ||||| |||||| | |||| | ||||||||| || | Sbjct 25980617 AAGAGTGCGTCCA-TCCTCAAGTTGTTTGCCAGCAAAAATCAACCTTTGCTGATCTGGGG 25980675 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || ||||| || || ||| || ||| | | || | ||||| | | || | Sbjct 25980676 GGATCCCTTCCTTATCCTGGATCTTAGCTTTGACATTATCAATGGTGTCTGAGCTTTCAA 25980735 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| || | ||||| || || | ||||| || || |||||||| Sbjct 25980736 CCTCAAGAGTGATGGTCTTACCAGTAAGAGTTTTCACAAAGATTTGCAT 25980784 >seq2 Length=23562801 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 || || | ||| ||||| | || ||||| || || ||||| || || | |||| Sbjct 14982830 AACCGAAGAACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGG 14982889 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 || ||||||||||| ||||| | || ||||| || || || || || ||||| || Sbjct 14982890 CCATCCTCGAGCTGTTTTCCAGCGAAAATGAGACGCTGTTGGTCTGGTGGGATGCCCTCC 14982949 Query 139667 TTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| | || | ||| | | || | ||||| | || ||| ||||| | ||| Sbjct 14982950 TTGTC-TTGAATCTTGGCTTTGACATTGTCGATCGTGTCTGAGGACTCAACCTCGAGGGT 14983008 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| || ||||| ||||| ||||| || ||||| Sbjct 14983009 TATTGTCTTACCCGTCAAGGTTTTCACGAAGATCTGCAT 14983047 Score = 82.4 bits (90), Expect = 8e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| ||||||| ||| ||||| || || || || ||||| | || | | || Sbjct 4215664 CAAAACCAAGTGAAGCGTCGACTCCTTCTGGATATTGTAATCAGCAAGAGTTCGCCCATC 4215723 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 ||| | |||||||||||| | |||| | ||||||||| ||||| |||||||| ||||| Sbjct 4215724 TTCTAATTGTTTACCAGCAAAAATCAATCTTTGCTGATCAGGAGGGATGCCTTCCTTGTC 4215783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496048411188800