Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1 215 7e-51 seq17 172 8e-38 seq5 104 3e-17 seq7 100 4e-16 >seq1 Length=48367220 Score = 215 bits (238), Expect = 7e-51 Identities = 396/578 (69%), Gaps = 2/578 (0%) Strand=Plus/Plus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| |||||||| || || || || || |||| || | ||||| || || || || Sbjct 31903148 ACACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAG 31903207 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078 || |||||||| ||||| ||||| | ||||||||| | ||| ||| || || || Sbjct 31903208 GCCTGGCATTAGCCCACGTTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAA 31903267 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTAT 50138 || ||||| || ||||| |||| | ||||| || |||| ||| | | || Sbjct 31903268 TATCCCTTCCACGCAAGCAAAAGCAATTAACCTCTCCGCAAAACTCTCGCCTCCGTCGAT 31903327 Query 50139 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198 |||| | |||||| || |||||||| ||||| |||| ||| || ||||||| ||| Sbjct 31903328 CCACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAA 31903387 Query 50199 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 50258 || ||| || ||| || ||| || | || || || | ||||||||| ||||| || Sbjct 31903388 CAGGCGGTTCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACATCTC 31903447 Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 50318 || || || || ||||| || ||||| || ||||||||| | ||||| | | || Sbjct 31903448 TGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTTG 31903507 Query 50319 CACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 50378 |||||| | || || | || | ||| || || ||||| ||| ||| || || Sbjct 31903508 GACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCGGCGAA 31903567 Query 50379 AAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATT 50438 || || | || || || || ||||| |||| || || || || | ||| | | Sbjct 31903568 GAAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTGACC 31903627 Query 50439 GATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 50498 || |||| ||| | ||| || ||||| | ||||||||||| || || || || || || Sbjct 31903628 GACATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAATGAGGCTTCAGCTTTCTTGTA 31903687 Query 50499 CATATTCCAGATGTCAT-GATATTGGATTGGGAAAATA 50535 ||| | |||||| | || ||||||| |||||||| ||| Sbjct 31903688 CATCTCCCAGAT-TGATGGATATTGAATTGGGAACATA 31903724 >seq17 Length=14661173 Score = 172 bits (190), Expect = 8e-38 Identities = 386/577 (67%), Gaps = 2/577 (0%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || |||||||| || || || || || |||| || | ||||| ||||| || | Sbjct 8256684 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTTGAAAAGGTTAAC 8256625 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 || ||||| | ||||||||||| | ||||||||| | ||| ||| || || || Sbjct 8256624 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 8256565 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATC 50139 || ||||| || ||||| ||||| || ||||| | |||| |||| | | ||| Sbjct 8256564 ATCCCTTCCACGCAAGCAAAAGCAACTAGCCTCTCCGCGAAACTCTCGCTCCCGTCAATC 8256505 Query 50140 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 50199 ||| ||||| |||||||| ||||| |||| |||||| || |||| ||| Sbjct 8256504 CACCGCAAGGCCCACCGTGCCTTCTTAGCCACACACGGCACCGTTTCGATAGCATGAAAC 8256445 Query 50200 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 50259 ||| || || || | | ||| || | |||||| || | || |||||| ||||| || Sbjct 8256444 AGACGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTCT 8256385 Query 50260 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 50319 || || || || ||||| || ||||| |||||||| ||| | ||||| | | || Sbjct 8256384 GAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTGG 8256325 Query 50320 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 50379 || ||| | || || | || | |||||| || || || ||| ||| || || Sbjct 8256324 ACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGAAG 8256265 Query 50380 AACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG 50439 || || | ||||| || || || || |||| ||| || || || | ||| | | Sbjct 8256264 AAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGCGG 8256205 Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 50499 ||||| || | ||| || || || | |||||||| || ||||| || || || ||| Sbjct 8256204 ATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTAC 8256145 Query 50500 ATATTCCAGATGTCAT-GATATTGGATTGGGAAAATA 50535 || | |||||| | || | || || || ||||| ||| Sbjct 8256144 ATCTCCCAGAT-TGATGGGTACTGAATGGGGAACATA 8256109 >seq5 Length=25802683 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | || || | ||| | || ||||||||||||| ||| || Sbjct 6278370 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCAACATTGGAACAATGCC 6278429 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| ||||| ||||| |||||| ||||||| || || || Sbjct 6278430 ATTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCACGGATGTTGTGGGCAGA 6278489 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 || ||| ||||| ||||| |||| ||| | || || || || |||||||| || Sbjct 6278490 TACACCGATTCCTCCTGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATAT 6278549 Query 80274 GCCCTCTATGCTATCATCAATCATG 80298 || || || |||||||| ||||| Sbjct 6278550 TCCTTCAATACTATCATCTTTCATG 6278574 Score = 100 bits (110), Expect = 4e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| ||||| || | ||| |||||||| || || ||||| | ||||| | || | Sbjct 6278748 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCAAATGG 6278807 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 ||||| | |||||||| || ||||| || |||||||| || || || | ||| | | Sbjct 6278808 TACGTTTTGATAGCTGAATCAATATCATCTTTGTGAATTCCAACAGCAACCCTCATCAGC 6278867 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 ||||||||||| ||||| || | ||| | | |||| | ||| ||| |||| | Sbjct 6278868 ATGTGCTGAGGCCTTTCCACAACCTTTCCTTGGACCTTCAGGAGGTAGGATCTTTCAAGG 6278927 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 80569 || || || ||||| || | || |||||| || || || || || | |||| Sbjct 6278928 GTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAGATGATCTCAGAGT 6278982 Score = 86.0 bits (94), Expect = 9e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | ||| ||||| || | |||| | ||| |||| ||||| Sbjct 20777745 TCCTCCTTGATCAACATAGCGAGCAGTGTTGTTGAACACTCGAAGCATGGGAACTATACC 20777686 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 |||||| |||||||| ||||| || || || || |||| | |||||| || | Sbjct 20777685 ATTGGAAGTACCATTTGTCCCCCGAATGTAACTGCCTGTGGCGTGGATATTATGAACAGC 20777626 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || | ||| || | || || || | |||||||| || Sbjct 20777625 AATACCAATTCCTCCAGCTAATTTGCTAATAACAGCACACTCCTTCAGAGTATCATATAT 20777566 Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||| || ||||| ||||| ||||| || ||||| || || Sbjct 20777565 GCCTTCAATGCTGTCATCTTTCATGCACAGGAGAAAGCAACT 20777524 >seq7 Length=15101417 Score = 100 bits (110), Expect = 4e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 |||||| ||||| | || | || || | ||| | || | ||||||||||| ||| || Sbjct 5425448 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCAACATTGGAACAATGCC 5425507 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 ||| ||||| ||||| || || ||||| |||||| ||||||| || || || || Sbjct 5425508 ATTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 5425567 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 || ||| ||||| || || |||| ||| | || || || || |||||||| || Sbjct 5425568 TACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATAT 5425627 Query 80274 GCCCTCTATGCTATCATCAATCATG 80298 || || || |||||||| ||||| Sbjct 5425628 TCCTTCAATACTATCATCTTTCATG 5425652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718246228402960