Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18]
2,514 sequences; 417,286,671 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq1 215 7e-51
seq17 172 8e-38
seq5 104 3e-17
seq7 100 4e-16
>seq1
Length=48367220
Score = 215 bits (238), Expect = 7e-51
Identities = 396/578 (69%), Gaps = 2/578 (0%)
Strand=Plus/Plus
Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018
||| |||||||| || || || || || |||| || | ||||| || || || ||
Sbjct 31903148 ACACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAG 31903207
Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAA 50078
|| |||||||| ||||| ||||| | ||||||||| | ||| ||| || || ||
Sbjct 31903208 GCCTGGCATTAGCCCACGTTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAA 31903267
Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTAT 50138
|| ||||| || ||||| |||| | ||||| || |||| ||| | | ||
Sbjct 31903268 TATCCCTTCCACGCAAGCAAAAGCAATTAACCTCTCCGCAAAACTCTCGCCTCCGTCGAT 31903327
Query 50139 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 50198
|||| | |||||| || |||||||| ||||| |||| ||| || ||||||| |||
Sbjct 31903328 CCACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAA 31903387
Query 50199 GAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTC 50258
|| ||| || ||| || ||| || | || || || | ||||||||| ||||| ||
Sbjct 31903388 CAGGCGGTTCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACATCTC 31903447
Query 50259 CGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 50318
|| || || || ||||| || ||||| || ||||||||| | ||||| | | ||
Sbjct 31903448 TGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTTG 31903507
Query 50319 CACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 50378
|||||| | || || | || | ||| || || ||||| ||| ||| || ||
Sbjct 31903508 GACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCGGCGAA 31903567
Query 50379 AAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATT 50438
|| || | || || || || ||||| |||| || || || || | ||| | |
Sbjct 31903568 GAAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTGACC 31903627
Query 50439 GATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 50498
|| |||| ||| | ||| || ||||| | ||||||||||| || || || || || ||
Sbjct 31903628 GACATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAATGAGGCTTCAGCTTTCTTGTA 31903687
Query 50499 CATATTCCAGATGTCAT-GATATTGGATTGGGAAAATA 50535
||| | |||||| | || ||||||| |||||||| |||
Sbjct 31903688 CATCTCCCAGAT-TGATGGATATTGAATTGGGAACATA 31903724
>seq17
Length=14661173
Score = 172 bits (190), Expect = 8e-38
Identities = 386/577 (67%), Gaps = 2/577 (0%)
Strand=Plus/Minus
Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019
|| |||||||| || || || || || |||| || | ||||| ||||| || |
Sbjct 8256684 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTTGAAAAGGTTAAC 8256625
Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079
|| ||||| | ||||||||||| | ||||||||| | ||| ||| || || ||
Sbjct 8256624 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 8256565
Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATC 50139
|| ||||| || ||||| ||||| || ||||| | |||| |||| | | |||
Sbjct 8256564 ATCCCTTCCACGCAAGCAAAAGCAACTAGCCTCTCCGCGAAACTCTCGCTCCCGTCAATC 8256505
Query 50140 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAG 50199
||| ||||| |||||||| ||||| |||| |||||| || |||| |||
Sbjct 8256504 CACCGCAAGGCCCACCGTGCCTTCTTAGCCACACACGGCACCGTTTCGATAGCATGAAAC 8256445
Query 50200 AGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCC 50259
||| || || || | | ||| || | |||||| || | || |||||| ||||| ||
Sbjct 8256444 AGACGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTCT 8256385
Query 50260 GAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGC 50319
|| || || || ||||| || ||||| |||||||| ||| | ||||| | | ||
Sbjct 8256384 GAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTGG 8256325
Query 50320 ACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 50379
|| ||| | || || | || | |||||| || || || ||| ||| || ||
Sbjct 8256324 ACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGAAG 8256265
Query 50380 AACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG 50439
|| || | ||||| || || || || |||| ||| || || || | ||| | |
Sbjct 8256264 AAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGCGG 8256205
Query 50440 ATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 50499
||||| || | ||| || || || | |||||||| || ||||| || || || |||
Sbjct 8256204 ATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTAC 8256145
Query 50500 ATATTCCAGATGTCAT-GATATTGGATTGGGAAAATA 50535
|| | |||||| | || | || || || ||||| |||
Sbjct 8256144 ATCTCCCAGAT-TGATGGGTACTGAATGGGGAACATA 8256109
>seq5
Length=25802683
Score = 104 bits (114), Expect = 3e-17
Identities = 146/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153
|||||| ||||| | || | || || | ||| | || ||||||||||||| ||| ||
Sbjct 6278370 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCAACATTGGAACAATGCC 6278429
Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213
||| ||||| ||||| ||||| ||||| |||||| ||||||| || || ||
Sbjct 6278430 ATTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCACGGATGTTGTGGGCAGA 6278489
Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273
|| ||| ||||| ||||| |||| ||| | || || || || |||||||| ||
Sbjct 6278490 TACACCGATTCCTCCTGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATAT 6278549
Query 80274 GCCCTCTATGCTATCATCAATCATG 80298
|| || || |||||||| |||||
Sbjct 6278550 TCCTTCAATACTATCATCTTTCATG 6278574
Score = 100 bits (110), Expect = 4e-16
Identities = 163/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394
||||| ||||| || | ||| |||||||| || || ||||| | ||||| | || |
Sbjct 6278748 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCAAATGG 6278807
Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454
||||| | |||||||| || ||||| || |||||||| || || || | ||| | |
Sbjct 6278808 TACGTTTTGATAGCTGAATCAATATCATCTTTGTGAATTCCAACAGCAACCCTCATCAGC 6278867
Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514
||||||||||| ||||| || | ||| | | |||| | ||| ||| |||| |
Sbjct 6278868 ATGTGCTGAGGCCTTTCCACAACCTTTCCTTGGACCTTCAGGAGGTAGGATCTTTCAAGG 6278927
Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 80569
|| || || ||||| || | || |||||| || || || || || | ||||
Sbjct 6278928 GTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAGATGATCTCAGAGT 6278982
Score = 86.0 bits (94), Expect = 9e-12
Identities = 152/222 (68%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153
|||||| ||||| | || | ||| ||||| || | |||| | ||| |||| |||||
Sbjct 20777745 TCCTCCTTGATCAACATAGCGAGCAGTGTTGTTGAACACTCGAAGCATGGGAACTATACC 20777686
Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213
|||||| |||||||| ||||| || || || || |||| | |||||| || |
Sbjct 20777685 ATTGGAAGTACCATTTGTCCCCCGAATGTAACTGCCTGTGGCGTGGATATTATGAACAGC 20777626
Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273
| ||| ||||| || || | ||| || | || || || | |||||||| ||
Sbjct 20777625 AATACCAATTCCTCCAGCTAATTTGCTAATAACAGCACACTCCTTCAGAGTATCATATAT 20777566
Query 80274 GCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315
||| || ||||| ||||| ||||| || ||||| || ||
Sbjct 20777565 GCCTTCAATGCTGTCATCTTTCATGCACAGGAGAAAGCAACT 20777524
>seq7
Length=15101417
Score = 100 bits (110), Expect = 4e-16
Identities = 145/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153
|||||| ||||| | || | || || | ||| | || | ||||||||||| ||| ||
Sbjct 5425448 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCAACATTGGAACAATGCC 5425507
Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213
||| ||||| ||||| || || ||||| |||||| ||||||| || || || ||
Sbjct 5425508 ATTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 5425567
Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273
|| ||| ||||| || || |||| ||| | || || || || |||||||| ||
Sbjct 5425568 TACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATAT 5425627
Query 80274 GCCCTCTATGCTATCATCAATCATG 80298
|| || || |||||||| |||||
Sbjct 5425628 TCCTTCAATACTATCATCTTTCATG 5425652
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718246228402960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |