Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq17 109 5e-19 seq1 105 6e-18 seq10 82.4 7e-11 >seq17 Length=14661173 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 ||||| |||||||||||||| || ||||||| || | ||||||||||| ||||| Sbjct 8256684 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTTGAAAAGGTTAAC 8256625 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || |||||||| || || ||||||||||||||||| ||| ||| ||| || || ||| Sbjct 8256624 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 8256565 Query 13992 ATTCCCTCAACTGCAGCAAACGC 14014 || || || || |||||| || Sbjct 8256564 ATCCCTTCCACGCAAGCAAAAGC 8256542 >seq1 Length=48367220 Score = 105 bits (116), Expect = 6e-18 Identities = 370/564 (66%), Gaps = 19/564 (3%) Strand=Plus/Plus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 |||||| |||||||||||||| || ||||||| || | ||||| || || || | Sbjct 31903148 ACACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAG 31903207 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAA 13990 |||||||| | || |||||||||||||||||||| ||| ||| ||| || || || Sbjct 31903208 GCCTGGCATTAGCCCACGTTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAA 31903267 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC---AAACGATGCTTTTTTGTT 14047 ||| || || || |||||| || ||||| | ||||| |||| | | | | | Sbjct 31903268 TATCCCTTCCACGCAAGCAAAAGCAATTAACC--TCTCCGCAAAACTCT-CGCCTCCG-T 31903323 Query 14048 CGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 || ||||| | |||||| || | || || | | | || || ||||| || Sbjct 31903324 CG--ATCCACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGC 31903381 Query 14108 ATTAAATAAATATTCCTTCTCTTTAG--TACTTGAAATGTATGTAT-CAATAAGTAAG-C 14163 || ||| | | |||||| ||| | |||| ||||| || | ||| || ||| | Sbjct 31903382 ATGAAACAGGCGGTTCTTCTCAGTAGAATCCTTG--ATGTAGGTCTCCAACAA--AAGAC 31903437 Query 14164 TATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCATCTAGCT 14222 | ||||| || ||||| || || || || || ||||| || || || |||||| | || Sbjct 31903438 TGTACATCTCTGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCA-CGCGCC 31903496 Query 14223 TCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCA 14282 ||||| ||| ||||| || | |||| | ||| || || || |||||| Sbjct 31903497 TCCGAGACTTGGACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCA 31903556 Query 14283 CTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTT 14342 || || || || || | | || ||| |||| || ||| ||| | || ||| Sbjct 31903557 GAGGCGGCGAAGAAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTT 31903616 Query 14343 TTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACA 14402 | ||| | | ||| ||| ||||| || || ||| | |||||||| || || Sbjct 31903617 TCCCAGTGACCGACATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAATGAGGCTTCA 31903676 Query 14403 GCTTTTTTATACATTACCCATATT 14426 ||||| || ||||| |||| ||| Sbjct 31903677 GCTTTCTTGTACATCTCCCAGATT 31903700 >seq10 Length=21538349 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/102 (78%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| |||||||| || |||||||||||| || |||||||| || ||||| || Sbjct 3696989 CAAGCAAAGTCACAATGTAGCCCCTCATCTCTAGATATTAGTTCGTTCGAGAATGTCAAA 3696930 Query 13932 CCTGGCATCAATCCTCGtttttttAACC--AAAATATTGCAG 13971 |||||||||| |||| ||||| | || ||||| ||||| Sbjct 3696929 ACTGGCATCAAGCCTCTCTTTTTAAGCCAGAAAATGGTGCAG 3696888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479712924547600