Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq17 102 8e-17 seq1 89.7 5e-13 seq10 82.4 7e-11 >seq17 Length=14661173 Score = 102 bits (112), Expect = 8e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 ||||| |||||||||||||| || ||||||| || | ||||||||||| ||||| Sbjct 8256684 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTTGAAAAGGTTAAC 8256625 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || |||||||| || || ||||||||||||||||| ||| || || || || ||| Sbjct 8256624 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 8256565 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAG 13808 || || || || |||||| || | ||| Sbjct 8256564 ATCCCTTCCACGCAAGCAAAAGCAACTAG 8256536 >seq1 Length=48367220 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 |||||| |||||||||||||| || ||||||| || | ||||| || || || | Sbjct 31903148 ACACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAG 31903207 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 |||||||| | || |||||||||||||||||||| ||| || || || || || Sbjct 31903208 GCCTGGCATTAGCCCACGTTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAA 31903267 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTA 13807 ||| || || || |||||| || |||| Sbjct 31903268 TATCCCTTCCACGCAAGCAAAAGCAATTA 31903296 >seq10 Length=21538349 Score = 82.4 bits (90), Expect = 7e-11 Identities = 80/102 (78%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| |||||||| || |||||||||||| || |||||||| || ||||| || Sbjct 3696989 CAAGCAAAGTCACAATGTAGCCCCTCATCTCTAGATATTAGTTCGTTCGAGAATGTCAAA 3696930 Query 13720 CCTGGCATCAATCCTCGtttttttAACC--AAAATATTGCAG 13759 |||||||||| |||| ||||| | || ||||| ||||| Sbjct 3696929 ACTGGCATCAAGCCTCTCTTTTTAAGCCAGAAAATGGTGCAG 3696888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478573760346960