Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq4 105 5e-18 seq15 93.3 3e-14 seq7 84.2 2e-11 seq11 82.4 6e-11 >seq4 Length=23188140 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | || | |||| ||||||||||| || | ||||||||||| | Sbjct 1307312 CCTCCACGGAGACGGAGGACAAGGTGGAGGGTGCTCTCCTTCTGAATATTGTAATCGGCC 1307371 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || || | ||||| ||||| || ||||| || |||||||| | || Sbjct 1307372 AAAGTCCGACCATCTTCGAGCTGTTTCCCGGCGAAGATCAAACGTTGTTGATCCGGTGGG 1307431 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | || || || || ||| ||||||| || | | ||||||| ||| || Sbjct 1307432 ATGCCCTCCTTGTCTTGAATCTTGGCTTTGACGTTGTCGATGGTGTCGCTGCTCTCCACC 1307491 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 || | |||||||| || ||||| | ||||||||| || || ||||| || || Sbjct 1307492 TCAAGGGTTATAGTCTTGCCGGTCAAAGTTTTCACGAAGATCTGCATCTTTTT 1307544 >seq15 Length=15134944 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 |||||| |||| |||| |||||| || | ||||| || | | |||||| |||| || Sbjct 12612270 CACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGTGTACGGCCGTCCTC 12612329 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 | ||||| || || ||||| | ||||||||||| | || | |||||| || || Sbjct 12612330 GAGCTGTTTTCCAGCGAAAATGAGACGCTGTTGATCCGGTGGGATACCTTCCTTGTCTTG 12612389 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTT 43079 ||| ||||||| || |||| ||||| | ||| || || | ||||| || || Sbjct 12612390 AATCTTGGCTTTGACATTGTCAACAGTGTCTGAGGACTCAACCTCGAGGGTTATTGTCTT 12612449 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCATTTTC 43113 || || | |||||||| || || ||||| ||| Sbjct 12612450 GCCCGTCAAGGTTTTCACGAAGATCTGCATCTTC 12612483 >seq7 Length=15101417 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| |||| |||| |||||||| | || ||||| | | || ||| | || || Sbjct 1458912 ACCAAGTGGAGAGTGGATTCCTTTTGGATGTTATAATCAGCAAGGGTTCGTCCATCCTCA 1458971 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | |||||||| ||||| ||||| | ||| ||||| | || | ||||| || || | Sbjct 1458972 AGCTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGGGGGATCCCTTCCTTATCCTGG 1459031 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGACGTCTACCGTTATAGTTTT 43079 ||| |||| || | ||| || || | ||| | | || || | || || || || Sbjct 1459032 ATCTTGGCTTTCACATTATCAATAGTATC-CGAGCTTTCCACCTCAAGGGTGATGGTCTT 1459090 Query 43080 TCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || ||||||||||||||||||||||| Sbjct 1459091 GCCAGTGAGAGTTTTCACAAAAATTTGCAT 1459120 >seq11 Length=18885544 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | | || | ||||| ||||||||||| || | ||||||||||| | Sbjct 145360 CCTCCTCGGAGACGGAGGACAAGATGGAGGGTGCTCTCCTTCTGAATATTGTAATCGGCC 145301 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || || | || || | || || || || || || | ||||||||||| | || Sbjct 145300 AAAGTTCGGCCATCTTCGAGCTGCTTTCCAGCGAATATTAGACGCTGTTGATCCGGTGGG 145241 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| | ||||| || | | ||||||| ||| || Sbjct 145240 ATGCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACC 145181 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTTCTT 43115 || | || || || || ||||| || |||||||| || || ||||| || || Sbjct 145180 TCCAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCATGTTTTT 145128 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| || || || | ||| || | || | ||| ||| || || | ||| ||||| | Sbjct 145817 GCCACCGCGAAGGCGTAAGACAAGGTGAAGAGTAGACTCTTTCTGGATATTATAATCAGC 145758 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 ||| || | | | || ||||| || || || ||||| |||| | || || || | || Sbjct 145757 CAAAGTCCTTCCATCCTCCAACTGCTTCCCAGCAAAGATCAGCCTTTGCTGGTCCGGTGG 145698 Query 43002 CACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGA 43060 | || || || || |||| || | | ||||| || | | ||||||| ||| | Sbjct 145697 GATCCCCTCCTTGTC-CTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCA 145639 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||| ||||| ||||||||||| || ||||||||||| ||||| Sbjct 145638 CCTCCAGCGTAATAGTCTTTCCGGTTAGGGTCTTCACAAAAATCTGCAT 145590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381357915073812