Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq1 242 5e-59 seq17 167 3e-36 seq5 109 7e-19 seq7 104 3e-17 >seq1 Length=48367220 Score = 242 bits (268), Expect = 5e-59 Identities = 407/582 (70%), Gaps = 10/582 (2%) Strand=Plus/Plus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| |||||||| || || || || ||||||| || || ||||| || || || || Sbjct 31903148 ACACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAG 31903207 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA-GAAAAGA 42182 || |||||||| ||||| ||||| | ||||||||| | | |||| ||| || || | Sbjct 31903208 GCCTGGCATTAGCCCACGTTTTTTTAACCAAAATATCG-CACAAAAACTCCCCGAGAAAA 31903266 Query 42183 AGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCAT 42239 | || ||||| || ||||| ||||| | ||||| || ||| || | | ||| Sbjct 31903267 ATATCCCTTCCACGCAAGCAAAAGCAATTAACCTCTCCGCAAAACTCTCGCCTCCGTCG- 31903325 Query 42240 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299 |||||| | |||||| || |||||||| ||||| |||| ||| || ||||||| Sbjct 31903326 --ATCCACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCAT 31903383 Query 42300 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 ||| || ||| || ||| || ||| || | || || || | ||||||||| |||| Sbjct 31903384 GAAACAGGCGGTTCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACA 31903443 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 | ||||| || || || ||||| || ||||| || ||||||||| | ||||| | | Sbjct 31903444 TCTCTGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGA 31903503 Query 42420 CCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTG 42479 | || |||||| | || || | || | ||| ||| || ||||| ||| ||| | Sbjct 31903504 CTTGGACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCGG 31903563 Query 42480 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAAT 42539 | || || || | || || || || | ||| ||||| || || | || | ||| | Sbjct 31903564 CGAAGAAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGT 31903623 Query 42540 CATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTT 42599 | || |||| ||| | ||| || ||||| ||||||||||||| ||||| || || | Sbjct 31903624 GACCGACATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAATGAGGCTTCAGCTTTCT 31903683 Query 42600 TATACATATTCCAGATATCAT-GATATTGAATTGGGAAAATA 42640 | ||||| | |||||| | || |||||||||||||||| ||| Sbjct 31903684 TGTACATCTCCCAGAT-TGATGGATATTGAATTGGGAACATA 31903724 >seq17 Length=14661173 Score = 167 bits (184), Expect = 3e-36 Identities = 387/578 (67%), Gaps = 4/578 (1%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || |||||||| || || || || ||||||| || || ||||| ||||| || | Sbjct 8256684 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTTGAAAAGGTTAAC 8256625 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGAT-CCAGAAAAGAA 42183 || ||||| | ||||||||||| | ||||||||| | | |||| | || || || || Sbjct 8256624 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCG-CACAAAAACTCCCCGAGAAAAA 8256566 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTAT 42243 || ||||| || ||||| |||| || ||||| | ||| | || | | || Sbjct 8256565 TATCCCTTCCACGCAAGCAAAAGCAACTAGCCTCTCCGCGAAACTCTCGCTCCCGTCAAT 8256506 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 |||| ||||| |||||||| ||||| |||| |||||| || |||| ||| Sbjct 8256505 CCACCGCAAGGCCCACCGTGCCTTCTTAGCCACACACGGCACCGTTTCGATAGCATGAAA 8256446 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 ||| || || || | | ||| || | ||| || || | || |||||| ||||| || Sbjct 8256445 CAGACGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTC 8256386 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 ||| || || || ||||| || ||||| |||||||| ||| | ||||| | || || Sbjct 8256385 TGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTG 8256326 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 || ||| | || || | || | ||||||| || || || ||| ||| || || Sbjct 8256325 GACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGAA 8256266 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATT 42543 || || | ||||| || || | || ||||| || || | || | ||| | Sbjct 8256265 GAAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGCG 8256206 Query 42544 GATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATA 42603 |||||| || | ||| || || || | |||||||| || || || || || || || Sbjct 8256205 GATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTA 8256146 Query 42604 CATATTCCAGATATCAT-GATATTGAATTGGGAAAATA 42640 ||| | |||||| | || | || ||||| ||||| ||| Sbjct 8256145 CATCTCCCAGAT-TGATGGGTACTGAATGGGGAACATA 8256109 >seq5 Length=25802683 Score = 109 bits (120), Expect = 7e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | || | || || | ||| | || ||||||||||||| ||| || Sbjct 6278370 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCAACATTGGAACAATGCC 6278429 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| ||||| ||||| ||||| |||||| ||||||| || ||| || Sbjct 6278430 ATTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCACGGATGTTGTGGGCAGA 6278489 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 || ||| ||||| ||||| |||| ||| | || || || || |||||||| || Sbjct 6278490 TACACCGATTCCTCCTGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATAT 6278549 Query 72357 GCCCTCTATACTATCATCCATCATG 72381 || || ||||||||||| ||||| Sbjct 6278550 TCCTTCAATACTATCATCTTTCATG 6278574 >seq7 Length=15101417 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 |||||| ||||| | || | || || | ||| | || | ||||||||||| ||| || Sbjct 5425448 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCAACATTGGAACAATGCC 5425507 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| ||||| || || ||||| |||||| ||||||| || ||| || || Sbjct 5425508 ATTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 5425567 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 || ||| ||||| || || |||| ||| | || || || || |||||||| || Sbjct 5425568 TACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATAT 5425627 Query 72357 GCCCTCTATACTATCATCCATCATG 72381 || || ||||||||||| ||||| Sbjct 5425628 TCCTTCAATACTATCATCTTTCATG 5425652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671118109450640