Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq6 105 7e-18 seq4 89.7 5e-13 seq1 82.4 8e-11 >seq6 Length=26894541 Score = 105 bits (116), Expect = 7e-18 Identities = 146/203 (72%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 142987 TGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACC 143046 ||| ||||| ||||| |||||||||||| | || | ||| ||||||||||| || Sbjct 10380391 TGTGGATTCCTTTTGGATGTTGTAATCGGCAAGGGTACGGCCGTCCTCGAGTTGTTTGCC 10380332 Query 143047 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTT 143106 ||| | ||||| ||||||||||| ||||| || ||||||||||| ||||| ||| Sbjct 10380331 AGCGAAAATCAGGCGTTGCTGATCAGGAGGGATACCTTCTTTGTCTTGGATTTTGACTTT 10380272 Query 143107 TAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGT 143166 | | || | || || | || ||||||| ||| | || ||||| |||| || Sbjct 10380271 GACGTTGTCGATTGTATCAGAATTCTCGACTTCAAGAGTTATGGTTTTGCCTGTCAGGGT 10380212 Query 143167 TTTTACGAATATTTGCATAGCTT 143189 ||| ||||| || ||||| |||| Sbjct 10380211 TTTCACGAAGATCTGCAT-GCTT 10380190 >seq4 Length=23188140 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 142994 TCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAG 143053 || || || || ||||||||| || || | |||||||| ||||| || || || Sbjct 1307348 TCCTTCTGAATATTGTAATCGGCCAAAGTCCGACCATCTTCGAGCTGTTTCCCGGCGAAG 1307407 Query 143054 ATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT 143113 |||| |||||| ||||| || || ||||| || ||||| ||| || ||| | | Sbjct 1307408 ATCAAACGTTGTTGATCCGGTGGGATGCCCTCCTTGTCTTGAATCTTGGCTTTGACGTTG 1307467 Query 143114 TCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACG 143173 || | ||||| || || || |||| || | |||||||||||||| ||||| ||| Sbjct 1307468 TCGATGGTGTCGCTGCTCTCCACCTCAAGGGTTATAGTCTTGCCGGTCAAAGTTTTCACG 1307527 Query 143174 AATATTTGCATAGCTTATGTTTT 143196 || || ||||| ||| | |||| Sbjct 1307528 AAGATCTGCAT--CTTTTTTTTT 1307548 >seq1 Length=48367220 Score = 82.4 bits (90), Expect = 8e-11 Identities = 153/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTC 143034 || || || | ||| ||||| || || |||||||| || | ||| | || | ||||| Sbjct 4826408 ACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAGTCTGCAAGTGTACGTCCA-TCTTC 4826466 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 |||||||| || || | || ||||||||||| || || || |||||||| ||||| Sbjct 4826467 TAGTTGTTTTCCGGCGAAAATAAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTG 4826526 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||||| ||| | | || | || || | | ||| || || | || | ||||| Sbjct 4826527 GATTTTGGCTTTGACATTGTCGATTGTATCTGAAGATTCGACCTCGAGGGTTATGGTCTT 4826586 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTTTT 143196 || ||||| || || ||||| || ||||| ||| || ||| Sbjct 4826587 CCCCGTCAAGGTCTTCACGAAGATCTGCATGTCTTCTGGTTT 4826628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506998467072480