Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 8e-16 seq7 91.5 1e-13 seq1 82.4 6e-11 >seq6 Length=26894541 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || ||||||||||| ||||| |||||||| | || | | ||||| | ||||| || Sbjct 10380618 GTGGACTCCTTTTGGATATTATAATCCGCAAGGGTCCTACCATCCTCTAATTGTTTCCCA 10380559 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| |||| || ||||| |||||| || | || |||||||| ||| || ||| Sbjct 10380558 GCAAAAATTAGCCTCTGTTGATCCGGAGGGATACCTTCTTTGTCTTGAATCTTGGCCTTT 10380499 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | ||||||| | ||| ||| | || |||||||| || |||| ||| Sbjct 10380498 ACGTTGTCAATAGTATCGGAACTCTCGACTTCAAGAGTTATGGTTTTGCCGGTTAGGGTT 10380439 Query 19025 TTGACAAAAATTTGCAT 19041 ||||| || |||||||| Sbjct 10380438 TTGACGAAGATTTGCAT 10380422 >seq7 Length=15101417 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| ||||| | | ||||| ||| | ||||||||||| || || ||||| || ||| Sbjct 1458438 CCTCCACGCAAGCGCAGCACCAAGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCC 1458497 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||| ||||| || || ||| | ||||| ||||| ||||| ||| Sbjct 1458498 AGAGTGCGCCCATCCTCTAGCTGCTTGCCAGCAAAGATAAGCCTCTGTTGATCTGGGGGG 1458557 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGT 18993 | |||||||||||| ||||| || || | ||| || | ||| |||| | Sbjct 1458558 ATGCCCTCTTTGTCCTGGATTTTTGCCTTGACATTATCGATGGT---GTCAGAGCTCTCT 1458614 Query 18994 --TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||||||| || || || ||||| || || ||||| ||||| Sbjct 1458615 ACCTCCAAGGTAATGGTCTTCCCAGTCAAAGTCTTCACGAAAATCTGCAT 1458664 >seq1 Length=48367220 Score = 82.4 bits (90), Expect = 6e-11 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| || |||||||| || ||||||||||| |||| ||| | ||||||||||| Sbjct 25979669 GTGCAGAGTCGACTCCTTCTGGATATTGTAATCTGCCAAAGTTCGTCCATCCTCCAGCTG 25979728 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| | || | || ||||| || || | ||||| || || |||||| Sbjct 25979729 CTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGTGGGATACCCTCCTTATCCTGAATTTT 25979788 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAG-GCTC-CG-TTTCGACGGTAATGGTTTTACC 19014 || || | | | | |||| ||| |||| || ||| | |||||||||||| || Sbjct 25979789 GGCCTTGACATTGTCAATTGTAT---CAGAGCTCTCGACTTCCAAGGTAATGGTTTTTCC 25979845 Query 19015 TGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || ||||||||||| ||||| Sbjct 25979846 AGTGAGTGTCTTGACAAAAATCTGCAT 25979872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414560097748516