Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 1e-13 seq6 89.7 4e-13 seq17 86.0 4e-12 seq1 86.0 4e-12 >seq4 Length=23188140 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGT 43978 || || |||||||| || ||||||||||||||| || || |||| || | ||| Sbjct 1307108 TGGAGGGTGCTCTCCTTCTGAATATTATAATCGGCCAAAGTCCGACCATCTTCGAGCTGT 1307167 Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 || || ||||||||||| ||||| || ||| | || | || || |||||| ||| || Sbjct 1307168 TTCCCGGCAAATATCAAACGTTGTTGATCCGGTGGGATGCCCTCCTTATCTTGAATCTTG 1307227 Query 44039 TGTTTGACCATAGCAACAGTATCTGCCG-GCTCCACATCGACCGTAATTGTTTTACCGGT 44097 ||||| | | | || || || | |||||| || | ||||| || || || || Sbjct 1307228 GCCTTGACGTTGTCGATGGTGTC-GCTGCTCTCCACCTCAAGGGTAATGGTCTTCCCTGT 1307286 Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121 || ||||| |||||||| ||||| Sbjct 1307287 CAAGGTCTTAACAAATATCTGCAT 1307310 >seq6 Length=26894541 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||| | | |||| ||| || || ||| |||||||| |||||||| | Sbjct 10380876 CCGCCTCTCAAACGCAGTACCAGATGCAGAGTAGACTCCTTTTGAATGTTATAATC-TGC 10380818 Query 43955 AATTGACG-CTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | | |||| ||||| || || |||||||| || | || ||||| ||| | || Sbjct 10380817 AAGAGTCCTCCCATCTTCCAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCCGGGGG 10380758 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || || ||| || ||| || || ||| ||||| | || || Sbjct 10380757 AATCCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTATCAATTGTATCAGAGCTTTCAAC 10380698 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||| ||||| || || ||||||||||| || || |||||||| Sbjct 10380697 CTCAAGCGTGATTGTATTTCCAGTTAAAGTCTTAACGAAGATTTGCAT 10380650 >seq17 Length=14661173 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGT 43970 ||||||||| || ||| ||| || || || || ||||| | | || ||| |||| | Sbjct 4942840 CACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCGAGAGTG-CGCCCATCCT 4942898 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 | | ||| || || ||||| || | || || ||||| |||| | || ||||||||| Sbjct 4942899 CAAGTTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGAGGGATGCCCTCTTTATCTT 4942958 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 ||||| ||||| || ||| || || | |||||| || | || || || | Sbjct 4942959 GGATTTTAGCCTTGACATTATCAATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCT 4943018 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || |||||||||||||| |||||||| Sbjct 4943019 TCCCAGTCAAAGTCTTCACAAAAATTTGCAT 4943049 >seq1 Length=48367220 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || || ||||| | | |||||| || || ||| || || ||||| || || || | Sbjct 4826390 CCACCCCTCAAGCGAAGCACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAGTC-TGC 4826448 Query 43955 AATTG-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || || ||| |||| || | ||||||||| || || || | ||||||||||| | || Sbjct 4826449 AAGTGTACGTCCATCTTCTAGTTGTTTTCCGGCGAAAATAAGACGTTGCTGGTCTGGTGG 4826508 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| ||||| |||||| | | | ||||||| | || || Sbjct 4826509 GATGCCTTCCTTGTCTTGGATTTTGGCTTTGACATTGTCGATTGTATCTGAAGATTCGAC 4826568 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATGTC 44124 |||| || || || || || || || |||||||| || || |||||||| Sbjct 4826569 CTCGAGGGTTATGGTCTTCCCCGTCAAGGTCTTCACGAAGATCTGCATGTC 4826619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354766729836072