Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq6 91.5 1e-13 >seq6 Length=26894541 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || || || || || ||||| || || ||||| | | || || ||| || |||||| Sbjct 10380624 TGAAGGGTGGACTCCTTTTGGATATTATAATCCGCAAGGGTCCTACCATCCTCTAATTGT 10380565 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTT 20125 || || ||| |||| |||||||||||||| || | ||||||||||| ||| || Sbjct 10380564 TTCCCAGCAAAAATTAGCCTCTGTTGATCCGGAGGGATACCTTCTTTGTCTTGAATCTTG 10380505 Query 20126 TGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTGCCGGTC 20185 || || | | ||| || |||| | || ||| | || |||||||||||||| Sbjct 10380504 GCCTTTACGTTGTCAATAGTATCGGAACTCTCGACTTCAAGAGTTATGGTTTTGCCGGTT 10380445 Query 20186 AACGTTTTGACAAAAATTTGCAT 20208 | |||||||| || |||||||| Sbjct 10380444 AGGGTTTTGACGAAGATTTGCAT 10380422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419574344110434