Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq17 109 5e-19 >seq17 Length=14661173 Score = 109 bits (120), Expect = 5e-19 Identities = 357/554 (64%), Gaps = 3/554 (1%) Strand=Plus/Minus Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 || || |||||||| || | |||||||||| || | |||||||||||| |||| Sbjct 8256684 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTTGAAAAGGTTAAC 8256625 Query 13211 CCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaT 13270 |||||||| | ||| || ||||| | ||||||||| ||| ||| ||||| |||||| Sbjct 8256624 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 8256565 Query 13271 ATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCT 13330 || ||||| || ||||| || | | ||| || | | ||| | | | || Sbjct 8256564 ATCCCTTCCACGCAAGCAAAAGCAACTAGCCTCTCCGCGAA---ACTCTCGCTCCCGTCA 8256508 Query 13331 ATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTA 13390 |||||| |||||| ||| || | || || || |||| || || | | Sbjct 8256507 ATCCACCGCAAGGCCCACCGTGCCTTCTTAGCCACACACGGCACCGTTTCGATAGCATGA 8256448 Query 13391 AATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATT 13450 || | | ||| || |||| | || |||||||| || | || | || ||||| Sbjct 8256447 AACAGACGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATC 8256388 Query 13451 TCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACC 13510 ||||| || ||||| || ||||| || ||||| || |||||| | ||||| || || Sbjct 8256387 TCTGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTCCGAGACT 8256328 Query 13511 TGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCa 13570 || || || || | | || | |||||| || ||||| ||| || || Sbjct 8256327 TGGACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCG 8256268 Query 13571 aaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCT 13630 || || ||||| | || || || | || |||| | || ||| ||| | Sbjct 8256267 AAGAAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGG 8256208 Query 13631 GGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTA 13690 | | ||| || | ||| ||||||||| | |||||||| || || |||| ||||| Sbjct 8256207 CGGATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTG 8256148 Query 13691 TACATCATCCATAT 13704 |||||| ||| || Sbjct 8256147 TACATCTCCCAGAT 8256134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430969194968628