Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_005357.1 Length=42493 Score E Sequences producing significant alignments: (Bits) Value seq1285 105 2e-18 >seq1285 Length=9516 Score = 105 bits (116), Expect = 2e-18 Identities = 207/302 (69%), Gaps = 7/302 (2%) Strand=Plus/Plus Query 918 GCCGCGGCATTGAGTGTCAGGGGGCCGATCTGTCCGTCCTGCGCGGTGCCCACGGCAGCT 977 || |||||| || ||| |||||||| ||||| | ||| | ||| | || Sbjct 255 GCTGCGGCAATG---GTCTTGGGGCCGAAGATACCGTCATCCGCCGCGCCGGCCGCGCGC 311 Query 978 TGCAGCCACTTGGCCGCCTGGCCGGTGCCGTGGTTCACCGCAGCGTCGAACACCTGGAAG 1037 || ||||||||| | ||| ||| ||| ||| || || ||||||| || | |||| Sbjct 312 TGTAGCCACTTGATGGACTGCACGGGTCCGCTGTTGACGGCGCCGTCGAAGACGTCGAAG 371 Query 1038 GCCACGGCCGGCGGCAGCATGTCG-CCGCGAACCGGCGTCC-AGTAACGCGCGCGGTAGA 1095 ||| || || | | |||| || || |||| ||| |||| | | | |||| Sbjct 372 CGCACCGCGTCAGGTAACTGGTCGGCCTTGA--CGGCATCCCAGTACAGACGGTGATAGA 429 Query 1096 TTGCCTTGGCCGTGTCGCGCGGCATGTCGCGCATCGGCCCGGTGTAACCGTTAGCTCGCG 1155 | |||||||| || ||||||| |||||||||| || ||| || | || |||| Sbjct 430 TGGCCTTGGCGCGATCACGCGGCAGGTCGCGCATCTCTCCCAGGTAGCCATCGGCGCGCG 489 Query 1156 CTACGGCGGCGGTCACGCCCCACATAGTCTCGCCGCCGGGGTCGGCCGGGTTGTTGGAAT 1215 | || ||| || ||||||||||| ||||||||||| ||||| |||| |||||||||| Sbjct 490 CGACACGGGCCGTGACGCCCCACATCGTCTCGCCGCCCGGGTCCGCCGAATTGTTGGAAT 549 Query 1216 AA 1217 || Sbjct 550 AA 551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135851944188940