Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq11 114 1e-20 seq4 91.5 1e-13 >seq11 Length=18885544 Score = 114 bits (126), Expect = 1e-20 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||||||||||| ||||| |||||||| ||||| ||| | || || ||||| Sbjct 145337 ATGGAGGGTGCTCTCCTTCTGAATATTGTAATCGGCCAAAGTTCGGCCATCTTCGAGCTG 145278 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | |||| |||||| |||||| || | | ||||||||| ||| || Sbjct 145277 CTTTCCAGCGAATATTAGACGCTGTTGATCCGGTGGGATGCCTTCCTTGTCTTGAATCTT 145218 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || ||||| ||| | |||| ||| | || ||||| || ||| Sbjct 145217 GGCCTTGACGTTGTCG--ATGGTGTCGCTGCTCTCCACCTCCAGAGTGATGGTCTTGCCG 145160 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| |||||||| || |||||||| Sbjct 145159 GTGAGGGTTTTCACGAAGATCTGCAT 145134 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || || ||| |||||| || |||||||||||||| || || || | |||| Sbjct 16429993 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGC-AAGGGTGCGGCCATCCT 16429935 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||||||| | | || || | |||||| || || | | |||||||||| Sbjct 16429934 CAAGCTGCTTACCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCT 16429875 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || ||||| | | |||||||| | | |||| ||| | || ||||| | Sbjct 16429874 GGATCTTAGCCTTGACATTGTCGATGGTATCAGAACTCTCCACCTCCAAGGTGATGGTCT 16429815 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || || || || || ||||| || ||||| Sbjct 16429814 TTCCAGTAAGGGTCTTAACAAAGATTTGCAT 16429784 >seq4 Length=23188140 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||||||||||| ||||| |||||||| ||||| || | || || ||||| Sbjct 1307336 TGGAGGGTGCTCTCCTTCTGAATATTGTAATCGGCCAAAGTCCGACCATCTTCGAGCTGT 1307395 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || ||||| || |||||| || | | |||||||| ||| || Sbjct 1307396 TTCCCGGCGAAGATCAAACGTTGTTGATCCGGTGGGATGCCCTCCTTGTCTTGAATCTTG 1307455 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 |||| | | || ||||| ||| | |||| ||| | ||||| || || |||| Sbjct 1307456 GCTTTGACGTTGTCG--ATGGTGTCGCTGCTCTCCACCTCAAGGGTTATAGTCTTGCCGG 1307513 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 | | ||||||||| || ||||||||| Sbjct 1307514 TCAAAGTTTTCACGAAGATCTGCATC 1307539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421238293126514