Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq17 116 2e-21 seq4 114 7e-21 seq16 111 8e-20 seq9 111 8e-20 seq7 111 8e-20 seq8 107 1e-18 seq12 105 3e-18 seq10 105 3e-18 seq5 105 3e-18 seq14 104 1e-17 seq11 104 1e-17 seq2 104 1e-17 >seq17 Length=14661173 Score = 116 bits (128), Expect = 2e-21 Identities = 81/90 (90%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||||||| ||||| |||||||| | | |||||||| |||||||||||||||||||| Sbjct 3019691 TAATAAAAAA-CAAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCA 3019748 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 3019749 CGACGCTCTAACCAACTGAGCTAATAGGCC 3019778 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 13555974 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 13556033 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 13556034 TGAGCTAATAGGCC 13556047 >seq4 Length=23188140 Score = 114 bits (126), Expect = 7e-21 Identities = 82/94 (87%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 11437 AATTAATAAAAAAT-CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||| | || ||||| | |||||||||||| | | |||||||| |||||||||||||||| Sbjct 16235796 AATGATTATAAAATACTAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATT 16235737 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| ||||||||||||||| |||| Sbjct 16235736 AGCACGACGCTCTAACCAACTGAGCTAATAGGCC 16235703 >seq16 Length=14134809 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 286274 AAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 286333 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 286334 CAACTGAGCTAATAGGCC 286351 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| || |||| |||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 12259371 AAAATATAAAAT-GGCCCATGCACGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 12259313 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 12259312 GCTCTAACCAACTGAGCTAATAGGCC 12259287 >seq9 Length=12942059 Score = 111 bits (122), Expect = 8e-20 Identities = 86/101 (85%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 || |||| ||| |||||||| ||||||||||| | | |||||||| ||||||||| Sbjct 9445843 AATTATAAAAT-AATAAAAATG---ATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCG 9445788 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 9445787 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 9445747 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 6328603 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 6328544 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 6328543 TGAGCTAATAGGCC 6328530 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 9259886 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 9259945 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 9259946 TGAGCTAATAGGCC 9259959 >seq7 Length=15101417 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 164763 ATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 164822 Query 11514 ACTGAGCTAATGGGCCGT 11531 ||||||||||| |||||| Sbjct 164823 ACTGAGCTAATAGGCCGT 164840 >seq8 Length=18835763 Score = 107 bits (118), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||| |||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 1684861 AAAAATAGAAT-GGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 1684803 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 1684802 CTCTAACCAACTGAGCTAATAGGCC 1684778 Score = 107 bits (118), Expect = 1e-18 Identities = 76/87 (87%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 7312011 TAAAAAGTCA---TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGA 7312067 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 7312068 CGCTCTAACCAACTGAGCTAATAGGCC 7312094 >seq12 Length=14929429 Score = 105 bits (116), Expect = 3e-18 Identities = 80/96 (83%), Gaps = 7/96 (7%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAAT-------TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||||||||| |||| ||||||||| | | |||||||| |||||||||||||| Sbjct 2118562 AATAAAAAAGAAAATGAAGACATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTA 2118503 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| ||||||||||||||| |||| Sbjct 2118502 TTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 2118467 >seq10 Length=21538349 Score = 105 bits (116), Expect = 3e-18 Identities = 72/81 (89%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 13704793 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 13704734 Query 11516 TGAGCTAATGGGCC--GTCGA 11534 ||||||||| |||| ||||| Sbjct 13704733 TGAGCTAATAGGCCATGTCGA 13704713 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 20151477 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 20151536 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 20151537 TGAGCTAATAGGCC 20151550 >seq5 Length=25802683 Score = 105 bits (116), Expect = 3e-18 Identities = 74/84 (88%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| |||| |||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 8243909 AAAATAAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 8243967 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| |||| |||||||||| |||| Sbjct 8243968 TCTAACCAGCTGAGCTAATAGGCC 8243991 Score = 104 bits (114), Expect = 1e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 10852653 ATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 10852712 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 10852713 GCTGAGCTAATAGGCC 10852728 >seq14 Length=17716633 Score = 104 bits (114), Expect = 1e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||| ||| || ||||| ||| | | |||||||| |||||||||||||||||||||||| Sbjct 12171939 AAACAATATAAATGGCCTATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 12171998 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 12171999 GCTCTAACCAACTGAGCTAATAGGCC 12172024 >seq11 Length=18885544 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 7658902 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 7658961 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 7658962 TGAGCTAATAGGCC 7658975 >seq2 Length=23562801 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 18672699 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 18672758 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 18672759 TGAGCTAATAGGCC 18672772 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261483188073064