Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_006552.1 Length=65195 Score E Sequences producing significant alignments: (Bits) Value seq2282 122 4e-23 >seq2282 Length=2287 Score = 122 bits (134), Expect = 4e-23 Identities = 209/301 (69%), Gaps = 2/301 (1%) Strand=Plus/Minus Query 59640 CCGACCAAGGGGGACATTCCGACCATCGGTTACGGCTCCACCCGCTACGAGAATGGCCAA 59699 ||||| |||| ||| ||||||||||| |||||||||| ||||||| | ||| Sbjct 935 CCGACGCAGGGCGACCGCCCGACCATCGGCCACGGCTCCACGGTCTACGAGGACGGCACG 876 Query 59700 TCGGTGAAGCTGACCGATCCGCCGATCACCCGCCAGCGCGGCGAACAACTGGCGCGCAGC 59759 | ||| ||||| | || || |||||||||||| |||||| || |||| ||||||| Sbjct 875 CCCGTGCAGCTGTCGGACCCACCGATCACCCGCGAGCGCGCGCTGCAGCTGGTGCGCAGC 816 Query 59760 CTGATGGCGAAGGACGAACAGCAGTTCCGCGACTCGCTGCCCGGCGTGAAGCTGTTCCAG 59819 | | | ||||| || |||||| | | ||||| ||||| |||| ||| Sbjct 815 CACACCTCCAAGGATGAGGCCATGTTCCGAGCCAGCCTGCCAGGCGTAGCCCTGTACCAA 756 Query 59820 GAAGAGTATGACCTGTACCTGGATTTCACGGGCCAGTTCGGCATCACCAACTGGCGCGGT 59879 | ||||| ||||| || ||||| ||||| ||||| ||| ||| | |||||||| Sbjct 755 GCGGAGTACGACCTCTATCTGGACTTCACCTACCAGTACGGGATCGGCGCCTGGCGCGCC 696 Query 59880 AGCTCGATGCGC-CGCGACTTGCTCGCCGGCAACTACCGGCAGGCGTGCGACGACCTGCT 59938 ||| | |||||| | || | |||| || || | | | || || ||||| | |||||| Sbjct 695 AGCCCCATGCGCACTCGGC-TGCTGGCAGGGCAATTCGCGCCTGCCTGCGAGGCCCTGCT 637 Query 59939 G 59939 | Sbjct 636 G 636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 208492811714824