Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq2514 551 2e-152 seq13 147 6e-31 >seq2514 Length=157033 Score = 551 bits (610), Expect = 2e-152 Identities = 719/987 (73%), Gaps = 6/987 (1%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || || || ||||| |||||| | || |||||||| || | Sbjct 1331 TTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTG 1272 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||||||| ||| | | || ||| || ||||| |||| || || || || || Sbjct 1271 ATGATTCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCT 1212 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || ||||| || ||||| || ||||| || ||||| || || || | || ||||||||| Sbjct 1211 CCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAAT 1152 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 || |||||||| || | |||| | || || ||||| |||||||||| || || Sbjct 1151 ATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAATA 1092 Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 |||||||| |||| | | ||||| |||||||||||||||||||| ||| | || |||| Sbjct 1091 TGGGAAGC-GGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGT 1033 Query 19589 CTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAG 19648 | ||||||||| | || ||||| ||| || | |||||||||| || | | Sbjct 1032 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTTAGTTTCCG 973 Query 19649 ATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGC 19708 | || ||| | || ||||| || |||||| |||| || | | || ||| ||| Sbjct 972 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGC 913 Query 19709 TGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTA 19767 ||| ||||| | |||| ||| | || ||||| |||||| ||||| |||||||| || | Sbjct 912 TGT-TTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAA 854 Query 19768 TCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATC 19827 ||||||||||||||||||||||| | |||||||| || || ||||| ||||||||||| | Sbjct 853 TCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 794 Query 19828 CGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 19887 | || |||||| | || || ||||| |||||||| || || || ||| ||||||||| | Sbjct 793 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATG 734 Query 19888 GAAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATG 19947 | |||||| || || | |||| |||||| || || ||| ||| || | | Sbjct 733 GTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 674 Query 19948 GCTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 20007 | || | || || ||||| ||||| || |||||||| || || || || || || |||| Sbjct 673 GTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 614 Query 20008 GGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTG 20067 | ||||||| || ||||||||| ||| || || |||||||||||||||||||| | | Sbjct 613 GCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACATTTCTTCTTAG 554 Query 20068 CTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCA 20127 || ||| || || || || || ||| | || | | || || ||||||||||||||| Sbjct 553 CTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 494 Query 20128 ACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCA 20186 | || |||||||| || || ||||| || ||||||||| ||||| || |||| Sbjct 493 ATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAA-GGTCGTGTAATTAAT 435 Query 20187 ACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAAT 20246 || ||||||||| | | || | |||||||| || | ||||||||||| || || ||| Sbjct 434 ACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 375 Query 20247 GCTCATAACTTCCCACTTGATTTAGCT 20273 |||||||| ||||| || || ||||| Sbjct 374 GCTCATAATTTCCCTCTAGACCTAGCT 348 >seq13 Length=15658869 Score = 147 bits (162), Expect = 6e-31 Identities = 327/487 (67%), Gaps = 4/487 (1%) Strand=Plus/Plus Query 19662 CCATGGATATTCGTAGCATATACAGCACC-ACTATCAGCAGCTCTTGCTGTGTTTCTCGT 19720 || ||||| | || |||||| |||| || | | | | || || ||| ||| ||| | | Sbjct 4833067 CCTTGGATTGTTGTTGCATATTCAGCTCCTATTGTGA-CAACTATTGTTGTTTTTTTGAT 4833125 Query 19721 TTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTT 19780 ||||| | | || ||| |||||| ||||| ||||||| || || | ||||||||| Sbjct 4833126 TTACCTAATAGGTTAAGAAAGTTTTTCAGATGGGGTGCCTCTAGGAATATTTGGTACTTT 4833185 Query 19781 TAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCT 19840 |||||||||| | |||||| |||| || || | |||||||| | || || |||||| | Sbjct 4833186 TAACTTTATGATTGTATTCTAAGCTGAGCATTACATCCTTATAGACCCATTTCACATGTT 4833245 Query 19841 CGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTAC 19900 || || | || ||| | || || | | | || |||||| || |||||| || Sbjct 4833246 AGGCGTAACAGGTTTATGCAATGACTCCTTATCCAATGTTATGCATGGTTTTTTGGTAAC 4833305 Query 19901 TTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGG 19960 || | ||||||||||| | | ||| ||| || | || || | || || Sbjct 4833306 CTCTAATTTGATCAAGGAAACCAAATAAAATGAATCCACTAATGAAGGTTACAGATTTGG 4833365 Query 19961 GCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATT 20020 ||| | ||||| || ||| | || || | ||| || || | ||||| || ||| || Sbjct 4833366 TCAAAAGGAAGAAACTTATGACATCGTAGTTGCTCATGGTTCTTTTGGCTGACCGATCTT 4833425 Query 20021 TCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGT 20080 |||||||| ||| || | |||| ||||||||||||||| | | | ||| || | Sbjct 4833426 CTAATATGCTAGTTTTAACAGCTCTCATTCTTTACATTTCTTCTTAGGTTCTTGGCCTAT 4833485 Query 20081 GGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTT 20140 | || || ||| | || | | || || |||||||| || |||| || ||| ||| Sbjct 4833486 AATAGGTATCTGGTTCACTACTTTTGGTATTAGCACTATGCCTCTCAATCTAAAT--TTT 4833543 Query 20141 TAACTTT 20147 ||||| Sbjct 4833544 CTACTTT 4833550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144437287876584