Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq2514 482 4e-131 seq18 122 1e-22 seq6 114 2e-20 seq7 102 1e-16 >seq2514 Length=157033 Score = 482 bits (534), Expect = 4e-131 Identities = 675/947 (71%), Gaps = 0/947 (0%) Strand=Plus/Minus Query 211606 TATGTTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTT 211665 ||| |||| |||||||||||| | ||||| || | | | | ||||| | ||| Sbjct 1295 TATATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTCTGTATTT 1236 Query 211666 ATCGTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCT 211725 || | || ||||| || || ||||| || || || || || || |||||||| || || Sbjct 1235 ATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCT 1176 Query 211726 GGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCA 211785 || || | | ||||| ||||| ||||| |||||||| || |||| |||| || Sbjct 1175 GGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCT 1116 Query 211786 ATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAAT 211845 || || || ||||| || || || |||||||| ||| | ||||||| ||| | ||||| Sbjct 1115 ATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAAC 1056 Query 211846 GGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGA 211905 || |||||||| || | | | | |||||| | | || | | |||||||| Sbjct 1055 GGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGG 996 Query 211906 AGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCA 211965 | ||||||||||| | |||| | ||||||||||||||||| |||||| |||||| Sbjct 995 CGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCA 936 Query 211966 GCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTC 212025 || ||||| | || ||| ||||| ||| | |||| ||| ||||||| || || Sbjct 935 GCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTT 876 Query 212026 TCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCA 212085 || || || |||||| |||| || || || || || ||||| ||| | |||||||| || Sbjct 875 TCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCT 816 Query 212086 GAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGA 212145 || || |||||||||||||||||||| || ||| ||| || || ||| | ||||| || Sbjct 815 GAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGC 756 Query 212146 GCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACT 212205 | ||||| ||||||||| |||||| | || || ||| | ||| | |||||||| Sbjct 755 TCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACA 696 Query 212206 GGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATC 212265 | || || || | ||||||| || || ||||| ||||| || ||||| ||| Sbjct 695 GAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATC 636 Query 212266 GTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGC 212325 || || || ||||| || || || || | |||||||| ||||| || |||||| Sbjct 635 GTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCT 576 Query 212326 AGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATG 212385 | |||||| |||||| | || | |||||||| | || | ||||| || || | Sbjct 575 CGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 516 Query 212386 GGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGAT 212445 ||||| |||| ||||| ||||| |||||||| ||||| ||||||||||| || |||||| Sbjct 515 GGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 456 Query 212446 GCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATG 212505 |||| || || ||| |||| |||| || ||||| | || |||||||||||| Sbjct 455 AGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATG 396 Query 212506 GAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||||||||| ||| | ||||| || || ||||| || ||| |||| Sbjct 395 GAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTAGC 349 >seq18 Length=14966190 Score = 122 bits (134), Expect = 1e-22 Identities = 256/377 (68%), Gaps = 6/377 (2%) Strand=Plus/Plus Query 194593 TATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTACCTATCCTGCC 194652 ||||| | || || || ||||| || || || ||| | |||| ||| ||||||||| Sbjct 11867781 TATGTTATCCTAGCCGCCGCTAAAGTTGGCGGAATACACGCTAACAATACATATCCTGCC 11867840 Query 194653 GATTTCAT--CTATGACAATCTGATGATTCAGACAAATGTTATTGATGCTGCATATCGTA 194710 |||||||| | || ||||| ||| || || ||||| || || | | | ||| Sbjct 11867841 GATTTCATTGCCAT--AAATCTCCAGATCCAAACTAATGTAATCGACTCCTCTTTTCGAC 11867898 Query 194711 ATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGTTTCCAAAGA 194770 |||||||||||||||| |||||| | || || ||||| || || |||||| | || | Sbjct 11867899 ATGGAGTTAAGAAACTGTTGTTTTTGGGATCCTCTTGTATTTACCCTAAGCTAGCACCGC 11867958 Query 194771 TACCTATTACAGAGGATCAGTTACTTGCTAGTCCTTTGGAAGAATCTAAT-AGTGCTTAT 194829 || ||| | || || | ||| || | ||||| || | | ||| |||| || Sbjct 11867959 AGCCGATTCCTGAAAATGCACTGCTTACTGGGCCTTTAGAGCCAACGAATGAGTG-GTAC 11868017 Query 194830 GCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCGTCAGCAGTATGGATTT 194889 || ||||| |||||| | || || | |||||||| || || | |||||| | Sbjct 11868018 GCGATTGCGAAGATATCTGGGATTAAAATGTGTCAGGCTTACAGGATTCAGTATAATTGG 11868077 Query 194890 AATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATAATTTTGATATTAAT 194949 |||| || || |||||| || ||| |||| || || |||||||||||| || | Sbjct 11868078 GATGCTATTTCTGGAATGCCCACGAATTTATATGGGCCGAATGATAATTTTCATCCAGAA 11868137 Query 194950 AATGGTCATGTATTACC 194966 ||| |||||| || || Sbjct 11868138 AATTCTCATGTTTTGCC 11868154 >seq6 Length=26894541 Score = 114 bits (126), Expect = 2e-20 Identities = 249/368 (68%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 194602 CTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTACCTATCCTGCCGATTTCAT- 194660 || || |||||||| || || || || | |||| ||| || |||||||||||||| Sbjct 18298496 CTAGCCGCTGCTAAAGTCGGCGGGATCCACGCTAACAATACGTACCCTGCCGATTTCATT 18298437 Query 194661 -CTATGACAATCTGATGATTCAGACAAATGTTATTGATGCTGCATATCGTAATGGAGTTA 194719 |||| | |||| ||| || || ||||| ||||| | ||| ||| | ||||||| Sbjct 18298436 GCTATAA--ATCTCCAGATCCAAACTAATGTGATTGACTCCTCATTTCGCCACGGAGTTA 18298379 Query 194720 AGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGTTTCCAAAGATACCTATTA 194779 ||||| | |||||| | || || || || || || || ||||| || | || ||| Sbjct 18298378 AGAAATTTTTGTTTTTGGGATCTTCATGTATTTACCCAAAGTTAGCACCGCAGCCCATTC 18298319 Query 194780 CAGAGGATCAGTTACTTGCTAGTCCTTTGGAAGAATCTAAT-AGTGCTTATGCAATTGCA 194838 | || || | ||| || | ||||| || | ||| |||| || |||||||| Sbjct 18298318 CTGAAAATGCACTGCTTACTGGGCCTTTAGAGCCTACGAATGAGTG-GTACGCAATTGCG 18298260 Query 194839 AAGATAGCAGGTATGAGGATGTGTCAAGCATATCGTCAGCAGTATGGATTTAATGCAATA 194898 |||||||| || || | |||||| || || || | |||||| | | |||| || Sbjct 18298259 AAGATAGCTGGGATTAAGATGTGCCAGGCTTACAGGATTCAGTATAGCTGGGATGCTATT 18298200 Query 194899 TCATTAATGCCTACTAATCTATACGGACCTAATGATAATTTTGATATTAATAATGGTCAT 194958 || |||||| || || |||| || | |||||||||||| || | ||| |||| Sbjct 18298199 TCTGGAATGCCGACCAACTTATATGGTCGGAATGATAATTTTCATCCGGAGAATTCTCAT 18298140 Query 194959 GTATTACC 194966 || || || Sbjct 18298139 GTTTTGCC 18298132 >seq7 Length=15101417 Score = 102 bits (112), Expect = 1e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193946 TGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAAGAT 194005 ||| ||||| ||||| || ||||||||| | || || |||| ||||| || || ||||| Sbjct 13941813 TGGGATTCTTTTCAACCATGAATCTCCACGTAGGGGAGAGAATTTTGTGACCCGAAAGAT 13941754 Query 194006 TACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAGATTCTTTATCTTGGTAATCT 194065 ||| || | | | || || || || ||||| | || | | | || ||| | Sbjct 13941753 TACGAGAGCTGTTGGGAGAATTAAGGTAGGGTTGCAGAATAAGCTGTTTTTAGGGAATTT 13941694 Query 194066 TAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTGGTTAATGTT 194125 | || |||||||||||| |||| |||||| || ||||| |||||| | ||||| Sbjct 13941693 GCAGGCGTCGAGGGATTGGGGTTTCGCAGGGGATTACGTGGAAGCAATGTGGATGATGTT 13941634 Query 194126 GCAACAGGATGAACCCGATGATTATGTGATTGCTAC 194161 ||| ||||| | || |||||||| ||| |||| || Sbjct 13941633 GCAGCAGGAAAAGCCTGATGATTACGTGGTTGCGAC 13941598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807529822577840