Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq17 91.5 2e-13 seq8 84.2 2e-11 >seq17 Length=14661173 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || || ||||||||||| | |||||||| | || || || || ||||| ||||| Sbjct 8256684 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTTGAAAAGGTTAAC 8256625 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAAAAGAA 21594 || ||||| || || | |||||||||||||||||| | | |||| || || || || || Sbjct 8256624 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCG-CACAAAAACTCCCCGAGAAAAA 8256566 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTA 21623 || || || ||| |||||| ||||||| Sbjct 8256565 TATCCCTTCCACGCAAGCAAAAGCAACTA 8256537 >seq8 Length=18835763 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/108 (78%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 21476 CATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAA 21535 || ||||| |||||||||| || || || ||| ||||| |||||| || ||||| ||| Sbjct 14364033 CAAGCAAAGTCACAATGCAGCCCCTCGTCTCTAGATATTAGTTCATTCGAGAATGTCAAA 14363974 Query 21536 CCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT 21583 || ||||| || ||||||||||| | ||| || | || |||| | ||| Sbjct 14363973 CCTGGCATCAAGCCTCTCTTTTTAAGCCAGAA-AATGGCGCAGAAGCT 14363927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531884085017360