Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq14 96.9 3e-15 seq1 89.7 5e-13 seq6 86.0 6e-12 >seq14 Length=17716633 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || || || || || ||||| | || ||| |||| | || ||| Sbjct 8229135 AAGATGCAGATCTTCGTGAAGACCTTGACGGGAAAGACCATAACCCTCGAGGTTGAGTCA 8229076 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| ||||| | |||||| |||||| ||||| || || || ||||| || Sbjct 8229075 TCAGACACAATCGACAATGTCAAAGCCAAGATTCAGGACAAGGAGGGCATCCCTCCAGAC 8229016 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 ||||| | ||||||| || || ||||||||||| || | | | | | || ||||| Sbjct 8229015 CAACAGCGTCTCATTTTCGCTGGGAAACAACTCGAGGACGGTCGCACCCTCGCTGACTAC 8228956 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGA 26996 ||||| || || || || ||| |||| |||| || | || || || ||| Sbjct 8228955 AACATCCAGAAGGAGTCCACTCTCCACTTGGTGCTTCGCCTGAGGGGTGGA 8228905 >seq1 Length=48367220 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || |||||||| | |||||| | || | || Sbjct 25980328 ATGCAGATCTTTGTTAAGACTTTGACTGGAAAGACCATCACCTTGGAGGTTGAGAGCTCT 25980269 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || ||| || || ||||| || || || || || || ||| Sbjct 25980268 GACACTATTGATAACGTGAAAGCTAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCAA 25980209 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || ||||| | | ||||| ||||| ||||||| | | | ||| |||||||| Sbjct 25980208 CAGAGGCTCATCTTTGCTGGCAAGCAACTGGAAGATGGACGCACTCT-AGCTGACTATAA 25980150 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||| ||||| || |||| ||||| || |||||||||| || Sbjct 25980149 CATTCAAAAGGAATCCACACTCCACCTGGTGCTTCGACTTAGAGGTGG 25980102 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 |||||| | ||||| ||||| | ||||| || | ||||| | || | ||| ||| Sbjct 25980784 ATGCAAATCTTTGTGAAAACTCTTACTGGTAAGACCATCACTCTTGAGGTTGAAAGCTCA 25980725 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||| || | |||||| ||||| || || |||||||| || || ||| Sbjct 25980724 ---GACACCATTGATAATGTCAAAGCTAAGATCCAGGATAAGGAAGGGATCCCCCCAGAT 25980668 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || ||||| | |||| | ||||||||||| || |||| | | | || ||| Sbjct 25980667 CAGCAAAGGTTGATTTTTGCTGGCAAACAACTTGAGGATGGACGCACTCTTGCTGATTAT 25980608 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| ||||| || || |||| || || || | || ||||| || Sbjct 25980607 AACATTCAGAAAGAGTCCACCCTCCACCTAGTGCTTCGTCTCAGAGGTGG 25980558 >seq6 Length=26894541 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || ||||| | |||||| || || ||||||||||| || ||||| ||||| Sbjct 10380254 GATACAATCGACAACGTCAAAGTCAAAATCCAAGACAAAGAAGGTATCCCTCCTGATCAG 10380313 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | || |||| || |||||||||||||| || | | | | | ||| || ||| Sbjct 10380314 CAACGCCTGATTTTCGCTGGCAAACAACTCGAGGACGGCCGTACCCTTGCCGATTACAAC 10380373 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || ||||| ||||| || |||| || || ||||| ||| | || || Sbjct 10380374 ATCCAAAAGGAATCCACACTCCACCTTGTTCTGAGGCTTCGCGGCGG 10380420 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || ||||||||||| | ||||| | || | ||| Sbjct 10380650 ATGCAAATCTTCGTTAAGACTTTAACTGGAAATACAATCACGCTTGAGGTTGAAAGCTCT 10380709 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | || ||| |||||| ||||| |||||||| || || ||||| Sbjct 10380710 GATACAATTGATAACGTTAAAGCCAAGATTCAGGACAAGGAAGGGATTCCCCCGGATCAG 10380769 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||| | | || || || | ||||||| || | | || |||||| Sbjct 10380770 CAGAGGCTCATCTTTGCAGGGAAGCAGTTGGAAGATGGGAGGACTCTTGCAGATTATAAC 10380829 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| || |||||| | |||||||| ||| | | ||||| || Sbjct 10380830 ATTCAAAAGGAGTCTACTCTGCATCTGGTACTGCGTTTGAGAGGCGG 10380876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478647358034080