Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5 100 7e-16 >seq5 Length=25802683 Score = 100 bits (110), Expect = 7e-16 Identities = 167/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 ||||||||| || ||||| || || ||| || || || | ||| || || ||| | Sbjct 20777526 TTGCTTTCTCCTGTGCATGAAAGATGACAGCATTGAAGGCATATATGATACTCTGAAGGA 20777585 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| ||||| ||| || || ||||||||| | | | || ||| | | || Sbjct 20777586 GTGTGCTGTTATTAGCAAATTAGCTGGAGGAATTGGTATTGCTGTTCATAATATCCACGC 20777645 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTT 363783 |||| |||||||||||| || ||| || ||| || ||||| | |||||||||||| Sbjct 20777646 CACAGG-CAGTTACATTCGGGGGACAAATGG-TACTTCCAATGGTATAGTTCCCATGCTT 20777703 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 || ||||| |||| ||||| | || || || || || ||||| ||| | ||||| Sbjct 20777704 CGAGTGTTCAACAACACTGCTCGCTATGTTGATCAAGGAGGAGGGAAGAGGAAAGG 20777759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303311618165948