Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 1e-14 seq11 91.5 1e-13 seq4 89.7 4e-13 seq6 87.8 2e-12 seq17 86.0 5e-12 seq1 84.2 2e-11 >seq5 Length=25802683 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/145 (77%), Gaps = 5/145 (3%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| |||||||| ||||| ||||| ||||| |||||| | || |||||| | ||| Sbjct 7051250 GACAAGGAAGGCATCCCTCCAGATCAGCAGAGGTTGATTTTTGCTGGTAAGCAATTGGAA 7051191 Query 24144 GATGACAGAA-ACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGT 24201 |||| | | | || | || |||||||||||||| || || || ||| |||| || || | Sbjct 7051190 GATGGCCGGACACTT--GCTGATTATAACATTCAGAAGGAGTCAACACTTCACTTGGTTT 7051133 Query 24202 TAAGATTGAGAGGAGG-ACTATAAT 24225 |||| | |||||||| ||||| || Sbjct 7051132 TAAGGCTCAGAGGAGGAACTATGAT 7051108 >seq11 Length=18885544 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 ||| || ||||| | || || ||||| | || || || | || || | || || || Sbjct 145127 AAAAAACATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACTCTGGAGGTGGA 145186 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 | || |||||||||||| | ||||| |||||| ||||| |||||||| || || Sbjct 145187 GAGCAGCGACACCATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAAGGCATCCCACC 145246 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 ||||||||| | || || | || || ||||| |||||||||| | ||| | ||| Sbjct 145247 GGATCAACAGCGTCTAATATTCGCTGGAAAGCAGCTCGAAGATGGCCGAACTTTGGCCGA 145306 Query 24164 TTATAACATTCAAAAAGA 24181 ||| || ||||| || || Sbjct 145307 TTACAATATTCAGAAGGA 145324 >seq4 Length=23188140 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 ||| || ||||| | || || ||||| || || || || | || ||| | || || || Sbjct 1307545 AAAAAAGATGCAGATCTTCGTGAAAACTTTGACCGGCAAGACTATAACCCTTGAGGTGGA 1307486 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 | || |||||||||||| | |||||| |||||| ||||| || ||||| || || Sbjct 1307485 GAGCAGCGACACCATCGACAACGTCAAAGCCAAGATTCAAGACAAGGAGGGCATCCCACC 1307426 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 |||||||| | |||| | || ||| || || |||||||||| Sbjct 1307425 GGATCAACAACGTTTGATCTTCGCCGGGAAACAGCTCGAAGATG 1307382 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || || || || | ||||| | || || ||| || | Sbjct 1307082 ATGCAGATTTTTGTGAAGACCTTGACAGGGAAGACCATTACTCTAGAGGTAGAGAGCAGC 1307023 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| || ||||| || || |||||| Sbjct 1307022 GACACCATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAGGGCATCCCACCTGATCAA 1306963 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||| | | ||| ||||| |||||||||| | | | | || || || Sbjct 1306962 CAACGCTTGATCTTTGCCGGAAAGCAGCTCGAAGATGGCCGGACTCTGGCTGACTACAAT 1306903 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || |||||||| ||||| |||| Sbjct 1306902 ATCCAAAAAGAGTCTACCCTTCA 1306880 >seq6 Length=26894541 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || ||| | || || | ||||||||| Sbjct 10380194 ATGCAGATCTTCGTGAAAACCCTGACAGGCAAAACCATAACTCTTGAAGTCGAGAATTCT 10380253 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | |||||| || || ||||||||||| || ||||| ||||| Sbjct 10380254 GATACAATCGACAACGTCAAAGTCAAAATCCAAGACAAAGAAGGTATCCCTCCTGATCAG 10380313 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | ||||||| || ||||| |||||||| || | | | | | | |||||| ||| Sbjct 10380314 CAACGCCTGATTTTCGCTGGCAAACAACTCGAGGACGGCCGTACCCTTGCCGATTACAAC 10380373 Query 24171 ATTCAAAAAGAATCTACA 24188 || ||||| ||||| ||| Sbjct 10380374 ATCCAAAAGGAATCCACA 10380391 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| |||| || ||| | || || | ||||||||| | Sbjct 10380422 ATGCAAATCTTCGTCAAAACCCTAACCGGCAAAACCATAACTCTTGAAGTCGAGAGTTCC 10380481 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || || |||||| ||||||||||| || ||||| |||||| Sbjct 10380482 GATACTATTGACAACGTAAAGGCCAAGATTCAAGACAAAGAAGGTATCCCTCCGGATCAA 10380541 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || |||| | || || ||| | || |||| || | | | |||||||| Sbjct 10380542 CAGAGGCTAATTTTTGCTGGGAAACAATTAGAGGATGGTAGGACCCTTGCGGATTATAAT 10380601 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || ||||| || || || |||| Sbjct 10380602 ATCCAAAAGGAGTCCACCCTTCA 10380624 >seq17 Length=14661173 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || || ||||| || | || ||| | || || ||| | | Sbjct 4943049 ATGCAAATTTTTGTGAAGACTTTGACTGGGAAGACCATCACCTTGGAGGTGGAGAGCTCC 4942990 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| || || || ||||| ||||| ||||| || ||| Sbjct 4942989 GACACCATTGATAATGTCAAGGCTAAAATCCAAGATAAAGAGGGCATCCCTCCAGACCAA 4942930 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | ||||||||||| || |||| | | || ||||| ||| Sbjct 4942929 CAGAGGCTCATCTTTGCTGGCAAGCAACTTGAGGATGGGCGCACTCTCGCTGATTACAAC 4942870 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || || || || ||||||| ||| Sbjct 4942869 ATCCAGAAGGAGTCCACCCTTCATTTGGTG 4942840 >seq1 Length=48367220 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || || |||||||| | || ||| | || || ||| | Sbjct 25980328 ATGCAGATCTTTGTTAAGACTTTGACTGGAAAGACCATCACCTTGGAGGTTGAGAGCTCT 25980269 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || ||| || || ||||| || ||||| || || || ||| Sbjct 25980268 GACACTATTGATAACGTGAAAGCTAAAATCCAGGACAAGGAGGGCATCCCCCCAGACCAA 25980209 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | | ||||||||||| ||||||| | || ||| || ||||| Sbjct 25980208 CAGAGGCTCATCTTTGCTGGCAAGCAACTGGAAGATG-GACGCACTCTAGCTGACTATAA 25980150 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||| ||||| ||| | || | ||| | || | ||||| || Sbjct 25980149 CATTCAAAAGGAATCCACACTCCACCTGGTGCTTCGACTTAGAGGTGG 25980102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429922827029670