Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq6 100 2e-16 seq7 89.7 4e-13 seq5 87.8 2e-12 seq2 84.2 2e-11 seq11 82.4 6e-11 >seq6 Length=26894541 Score = 100 bits (110), Expect = 2e-16 Identities = 146/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAA-CG-GAGTCCA 115343 |||||||| || |||||||| || || || |||||||| || | ||| || |||| | Sbjct 10380422 ATGCAAATCTTCGTCAAAACCCTAACCGGCAAAACCATAACTCTTGAAGTCGAGAGTTC- 10380480 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 ||| ||| ||| |||| ||||| || ||| || |||||||| |||| ||| Sbjct 10380481 -CGATACTATTG-ACAACGTAAAGGCCAAGATTCAAGACAAAGAAGGTATCCCTCCGGAT 10380538 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 || || || || |||| ||| || ||||||||||| |||| | ||| | || |||||| Sbjct 10380539 CAACAGAGGCTAATTTTTGCTGGGAAACAATTAGAGGATGGTAGGACCCTTGCGGATTAT 10380598 Query 115463 AACATTCAAAAAGAGTCTAC 115482 || || ||||| ||||| || Sbjct 10380599 AATATCCAAAAGGAGTCCAC 10380618 >seq7 Length=15101417 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| ||||| ||||| || || ||||| ||| | || ||| | Sbjct 1459120 ATGCAAATTTTTGTGAAAACTCTCACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCG 1459061 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || ||| ||| | || ||| || || ||||| ||||| ||||| |||||| Sbjct 1459060 GATACTATTGATAATGTGAAAGCCAAGATCCAGGATAAGGAAGGGATCCCCCCAGATCAG 1459001 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || | || | ||| |||||||| | || |||| |||| | || ||||||||| Sbjct 1459000 CAGAGGTTGATCTTTGCTGGCAAACAGCTTGAGGATGGACGAACCCTTGCTGATTATAAC 1458941 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 || ||||| || || ||| | || |||| | | ||| |||| || Sbjct 1458940 ATCCAAAAGGAATCCACTCTCCACTTGGTTCTACGTTTGAGAGGTGG 1458894 >seq5 Length=25802683 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 || || |||||| |||| ||||||||||||| | |||| ||| || |||||||||||| Sbjct 21066238 GACAAGGAAGGCATCCCTCCTGATCAGCAAAGATTGATTTTTGCTGGTAAACAATTAGAA 21066297 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| || | || ||||| ||||| || || ||||| ||| | || |||| ||| Sbjct 21066298 GATGGACGTACTCTTGCTGATTACAACATCCAGAAGGAGTCCACTCTTCACCTGGTTTTG 21066357 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 21066358 AGGCTTAGGGGAGGAA 21066373 >seq2 Length=23562801 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 || || |||||| |||| ||||||||||||| | |||| ||| || |||||||||||| Sbjct 4215783 GACAAGGAAGGCATCCCTCCTGATCAGCAAAGATTGATTTTTGCTGGTAAACAATTAGAA 4215724 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| ||| | || ||||| || || || || ||||| || | || |||| ||| Sbjct 4215723 GATGGGCGAACTCTTGCTGATTACAATATCCAGAAGGAGTCGACGCTTCACTTGGTTTTG 4215664 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 4215663 AGGCTCAGGGGAGGAA 4215648 >seq11 Length=18885544 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| || || || || ||||| || ||||| | || |||| |||| Sbjct 145590 ATGCAGATTTTTGTGAAGACCCTAACCGGAAAGACTATTACGCTGGAGGTGGAGAGCAGC 145649 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | |||| || || || ||| || || || || |||| || || Sbjct 145650 GACACCATCG-ACAACGTCAAGGCGAAGATTCAGGACAAGGAGGGGATCCCACCGGACCA 145708 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| || || | ||| || || || || || |||| | || |||| |||||||| Sbjct 145709 GCAAAGGCTGATCTTTGCTGGGAAGCAGTTGGAGGATGGAAGGACTTTGGCTGATTATAA 145768 Query 115465 CATTCAAAAAGAGTCTACT 115483 || || |||||||||||| Sbjct 145769 TATCCAGAAAGAGTCTACT 145787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425330967725680