Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1 210 3e-49 seq17 149 8e-31 seq5 109 7e-19 seq7 104 3e-17 >seq1 Length=48367220 Score = 210 bits (232), Expect = 3e-49 Identities = 416/608 (68%), Gaps = 6/608 (1%) Strand=Plus/Plus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| |||||||| || || || || || |||| || || ||||| || || || || Sbjct 31903148 ACACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAG 31903207 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA-GAAAAGA 32778 || |||||||| ||||| ||||| | ||||||||| | | |||| ||| || || | Sbjct 31903208 GCCTGGCATTAGCCCACGTTTTTTTAACCAAAATATCG-CACAAAAACTCCCCGAGAAAA 31903266 Query 32779 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTA 32838 | || ||||| || ||||| ||||| | ||||| || ||| ||| | | | Sbjct 31903267 ATATCCCTTCCACGCAAGCAAAAGCAATTAACCTCTCCGCAAAACTCTCGCCTCCGTCGA 31903326 Query 32839 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 32898 ||||| | |||||| || |||||||| ||||| |||| ||||| || |||| || Sbjct 31903327 TCCACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAA 31903386 Query 32899 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 32958 | || ||| || ||| || ||| || | || || || | ||||||||| ||||| | Sbjct 31903387 ACAGGCGGTTCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACATCT 31903446 Query 32959 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA-GCATCTAGCCTCGGTAATC 33017 | || || || || ||||| || || || || |||||||| ||| | ||||| | | Sbjct 31903447 CTGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCA-CGCGCCTCCGAGACT 31903505 Query 33018 TGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 33077 || |||||| | || || | || | ||| || || ||||| ||| ||| || Sbjct 31903506 TGGACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCGGCG 31903565 Query 33078 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 33137 || || || | || || || || | ||| ||||| || || || || | ||| | | Sbjct 31903566 AAGAAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTGA 31903625 Query 33138 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 33197 || |||| ||| | ||| || ||||| | ||||||||||| || || || || || Sbjct 31903626 CCGACATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAATGAGGCTTCAGCTTTCTTG 31903685 Query 33198 TACATATTCCAGATGTCAT-GATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTT 33256 ||||| | |||||| | || ||||||||||||| || ||| || | | ||| |||| Sbjct 31903686 TACATCTCCCAGAT-TGATGGATATTGAATTGGGAACATACAGAAGCGGTCTGGGTTTTC 31903744 Query 33257 TGCAAGGA 33264 || |||| Sbjct 31903745 AGCGAGGA 31903752 >seq17 Length=14661173 Score = 149 bits (164), Expect = 8e-31 Identities = 385/579 (66%), Gaps = 6/579 (1%) Strand=Plus/Minus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || |||||||| || || || || || |||| || || ||||| ||||| || | Sbjct 8256684 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTTGAAAAGGTTAAC 8256625 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAA 32779 || ||||| | ||||||||||| | ||||||||| | | |||| | || || || || Sbjct 8256624 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCG-CACAAAAACTCCCCGAGAAAAA 8256566 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTAT 32839 || ||||| || ||||| |||| || ||||| | ||| |||| | | || Sbjct 8256565 TATCCCTTCCACGCAAGCAAAAGCAACTAGCCTCTCCGCGAAACTCTCGCTCCCGTCAAT 8256506 Query 32840 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 32899 |||| ||||| |||||||| ||||| |||| || || ||||||| ||| Sbjct 8256505 CCACCGCAAGGCCCACCGTGCCTTCTTAGCCACACACGGCACCGTTTCGATAGCATGAAA 8256446 Query 32900 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 32959 ||| || || || | | ||| || | ||| || || | || |||||| ||||| || Sbjct 8256445 CAGACGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTC 8256386 Query 32960 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGT-AGAAGCATCTAGCCTCGGTAATCT 33018 || || || || ||||| || || || ||||||| | ||||| | ||||| | | | Sbjct 8256385 TGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCA-CGCGCCTCCGAGACTT 8256327 Query 33019 GTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 33078 | || ||| | || || | || | |||||| || || || ||| ||| || | Sbjct 8256326 GGACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGA 8256267 Query 33079 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 33138 | || || | ||||| || || | || ||||| || || || || | ||| | Sbjct 8256266 AGAAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGC 8256207 Query 33139 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 33198 |||||| || | ||| || || || | |||||||| || ||||| || || || | Sbjct 8256206 GGATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGT 8256147 Query 33199 ACATATTCCAGATGTCAT-GATATTGAATTGGAAAAATA 33236 |||| | |||||| | || | || ||||| || || ||| Sbjct 8256146 ACATCTCCCAGAT-TGATGGGTACTGAATGGGGAACATA 8256109 >seq5 Length=25802683 Score = 109 bits (120), Expect = 7e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | || || | ||| | || ||||||||||||| ||| || Sbjct 6278370 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCAACATTGGAACAATGCC 6278429 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||||| ||||| ||||| ||||| |||||| ||||||| || || || Sbjct 6278430 ATTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCACGGATGTTGTGGGCAGA 6278489 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 || ||| ||||| ||||| |||| ||| | || || || || |||||||| || Sbjct 6278490 TACACCGATTCCTCCTGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATAT 6278549 Query 63406 GCCCTCTATACTATCATCCATCATG 63430 || || ||||||||||| ||||| Sbjct 6278550 TCCTTCAATACTATCATCTTTCATG 6278574 Score = 104 bits (114), Expect = 3e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | ||| |||||||| ||||| ||||| | ||| | | || | Sbjct 6278748 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCACCGCTGAGACATCAAATGG 6278807 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 ||||| | |||||||| || ||||| || |||||||| || || || | ||| | | Sbjct 6278808 TACGTTTTGATAGCTGAATCAATATCATCTTTGTGAATTCCAACAGCAACCCTCATCAGC 6278867 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 ||||||||||| ||||| || | ||| | | |||| | ||||||| |||| | Sbjct 6278868 ATGTGCTGAGGCCTTTCCACAACCTTTCCTTGGACCTTCAGGAGGTAGGATCTTTCAAGG 6278927 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63701 || || || ||||| || | || |||||| || || || || || | |||| Sbjct 6278928 GTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAGATGATCTCAGAGT 6278982 >seq7 Length=15101417 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 |||||| ||||| | || | || || | ||| | || | ||||||||||| ||| || Sbjct 5425448 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCAACATTGGAACAATGCC 5425507 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||||| ||||| || || ||||| |||||| ||||||| || || || || Sbjct 5425508 ATTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 5425567 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 || ||| ||||| || || |||| ||| | || || || || |||||||| || Sbjct 5425568 TACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATAT 5425627 Query 63406 GCCCTCTATACTATCATCCATCATG 63430 || || ||||||||||| ||||| Sbjct 5425628 TCCTTCAATACTATCATCTTTCATG 5425652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633612088114400