Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1 185 1e-41 seq17 170 2e-37 >seq1 Length=48367220 Score = 185 bits (204), Expect = 1e-41 Identities = 586/895 (65%), Gaps = 15/895 (2%) Strand=Plus/Plus Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 ||||| || || || ||| | || || |||||||||||||| |||| ||| |||||| | Sbjct 31902858 TTTTGATACTCTCCGACTCTCTTCTCGAAGAAATTTGTCTTCCCTTGCAAGGATATCAAC 31902917 Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAA-CTCGTACAA 92919 | || | | | |||||| | || || || || | | ||| | | ||| Sbjct 31902918 TCCATCCAATCAAATGGATTAGCCACATTGTAC-ACCTTCCCGCACCCAAGCGCACCCAA 31902976 Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 | |||||||||||||| || || |||||| |||||| || | |||||| || | | Sbjct 31902977 CAGCCTATCAGCTACAAACTCAATATACTGACTCATCAACTCCCCATTCATCCCCACCA- 31903035 Query 92980 ACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038 ||| || ||||| | ||| || || || |||| || | || ||||| |||| | Sbjct 31903036 ACGCGCATGGTAGCGAGTCCACCACAAACTCCCTCTCTATATCCACAGCTTCCTTCACTA 31903095 Query 93039 TTTCTATTACTCTACTATTTGGT--GGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 | | | || | || | | | || || | ||| | ||| | | ||||| Sbjct 31903096 TCCCCTTCACGCG-CTCCTCACTCAGCTTCTTCCTCAACAGGCT-GTAAAGGAGACACGC 31903153 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156 || || ||| | ||||| ||||| || |||||||| || ||| || | ||||| Sbjct 31903154 GAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGGCCTGG 31903213 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | || || ||||| || | ||||||||| | | |||||| || || |||||||| || Sbjct 31903214 CATTAGCCCACGTTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCC 31903273 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 ||||||| ||||| || | | | || |||||| | || | | |||||| Sbjct 31903274 TTCCACGCAAGCAAAAGCAATTAACCTCTCCGCAAAACTCTCGCCT---CCGTCGATCCA 31903330 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 ||||||||| || || || || | ||| || | || || || || | ||| || Sbjct 31903331 CCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAACAG 31903390 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | | ||| ||||| ||||| || || | || ||| ||||| || || Sbjct 31903391 GCGGTTCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACATCTCTGA 31903450 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 |||| |||||| || || || ||||| ||||||||| | || |||| || || || Sbjct 31903451 GTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTTGGAC 31903510 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 ||||| || | | | ||| ||| || ||| || ||||| || || || || || Sbjct 31903511 TTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCGGCGAAGAA 31903570 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAG 93576 || | | || || || |||||||| ||| | || || ||||| | | Sbjct 31903571 GGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTGACCGAC 31903630 Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 |||| || |||||||| ||||| | |||||||| || ||||| ||||| |||||||| Sbjct 31903631 ATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAATGAGGCTTCAGCTTTCTTGTACAT 31903690 Query 93637 ATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGATTAGGGTTATC 93690 ||||| || | ||||||||||||| || || ||| || || | ||||| || Sbjct 31903691 CTCCCAGATTGATGGATATTGAATTGGGAACAT-ACAGAAGCGGTCTGGGTTTTC 31903744 >seq17 Length=14661173 Score = 170 bits (188), Expect = 2e-37 Identities = 576/883 (65%), Gaps = 18/883 (2%) Strand=Plus/Minus Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 ||||| || || || ||| |||| || |||||||| ||||| |||| |||||||||| | Sbjct 8256975 TTTTGATACTCTCCTACTCTTTTCTCGAAGAAATTAGTCTTCCCTTGCAAAGATATCAAC 8256916 Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAA-CTCGTACAA 92919 | || | | || |||||| | || || || || | | ||| | | ||| Sbjct 8256915 TCCATCCAATCGAATGGATTAGCCACATTGTAC-ACCTTCCCGCACCCAAGCGCACCCAA 8256857 Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 | ||||||||||| || || || |||||| |||||| || | ||||| |||| | Sbjct 8256856 CAGCCTATCAGCTACGAACTCAATATACTGACTCATCAACTCCCCGTTCATCCCTACCA- 8256798 Query 92980 ACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038 ||| || || || ||||| || || || |||| || | || || || |||| | Sbjct 8256797 ACGCGCATGGCAGCGCGTCCACCACAAACTCCCTCTCAATATCCACTGCATCCTTCACTA 8256738 Query 93039 TTTCTATTACTCTACTATTTGGT--GGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 | | | ||| | || | | | || || | || | |||| | | |||||| Sbjct 8256737 TCCCCTTCACT-TGCTCCTCACTCAGCTTCTTCCTCAGCA-AGCTGTAGAGAAGGCACGC 8256680 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156 || || ||| | ||||| ||||| || |||||||| || || ||||| || || Sbjct 8256679 GAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTTGAAAAGGTTAACCCCGG 8256620 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | || || || || || | ||||||||| | | |||||| || || |||||||| || Sbjct 8256619 CATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCC 8256560 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 ||||||| ||||| || || | | || || ||| | || | | | ||||| Sbjct 8256559 TTCCACGCAAGCAAAAGCAACTAGCCTCTCCGCGAAACTCTCGC---TCCCGTCAATCCA 8256503 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 || ||||| || || || | ||| || | ||||||||||| | ||| || Sbjct 8256502 CCGCAAGGCCCACCGTGCCTTCTTAGCCACACACGGCACCGTTTCGATAGCATGAAACAG 8256443 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 || ||| || ||||| || || || || | | ||| ||||| || || Sbjct 8256442 ACGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTCTGA 8256383 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 |||| |||||| || || || ||||||||||| ||| | || |||| || || || Sbjct 8256382 GTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTGGAC 8256323 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 |||| || | | | |||||||||| ||| || ||||| || || || || || Sbjct 8256322 CTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGAAGAA 8256263 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT--CGGAT 93574 || | | ||| || || || ||||| || | || || ||||| | ||||| Sbjct 8256262 GGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGCGGAT 8256203 Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634 ||| || |||||||| || || |||||||||| || || || ||||| |||||| Sbjct 8256202 --ATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTAC 8256145 Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAAC 93677 || ||||| || | | || ||||| || || || ||| ||| Sbjct 8256144 ATCTCCCAGATTGATGGGTACTGAATGGGGAACAT-ACAGAAC 8256103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556843300649360