Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18]
2,514 sequences; 417,286,671 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq1 185 1e-41
seq17 170 2e-37
>seq1
Length=48367220
Score = 185 bits (204), Expect = 1e-41
Identities = 586/895 (65%), Gaps = 15/895 (2%)
Strand=Plus/Plus
Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862
||||| || || || ||| | || || |||||||||||||| |||| ||| |||||| |
Sbjct 31902858 TTTTGATACTCTCCGACTCTCTTCTCGAAGAAATTTGTCTTCCCTTGCAAGGATATCAAC 31902917
Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAA-CTCGTACAA 92919
| || | | | |||||| | || || || || | | ||| | | |||
Sbjct 31902918 TCCATCCAATCAAATGGATTAGCCACATTGTAC-ACCTTCCCGCACCCAAGCGCACCCAA 31902976
Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979
| |||||||||||||| || || |||||| |||||| || | |||||| || | |
Sbjct 31902977 CAGCCTATCAGCTACAAACTCAATATACTGACTCATCAACTCCCCATTCATCCCCACCA- 31903035
Query 92980 ACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038
||| || ||||| | ||| || || || |||| || | || ||||| |||| |
Sbjct 31903036 ACGCGCATGGTAGCGAGTCCACCACAAACTCCCTCTCTATATCCACAGCTTCCTTCACTA 31903095
Query 93039 TTTCTATTACTCTACTATTTGGT--GGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096
| | | || | || | | | || || | ||| | ||| | | |||||
Sbjct 31903096 TCCCCTTCACGCG-CTCCTCACTCAGCTTCTTCCTCAACAGGCT-GTAAAGGAGACACGC 31903153
Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156
|| || ||| | ||||| ||||| || |||||||| || ||| || | |||||
Sbjct 31903154 GAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGGCCTGG 31903213
Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216
| || || ||||| || | ||||||||| | | |||||| || || |||||||| ||
Sbjct 31903214 CATTAGCCCACGTTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCC 31903273
Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276
||||||| ||||| || | | | || |||||| | || | | ||||||
Sbjct 31903274 TTCCACGCAAGCAAAAGCAATTAACCTCTCCGCAAAACTCTCGCCT---CCGTCGATCCA 31903330
Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336
||||||||| || || || || | ||| || | || || || || | ||| ||
Sbjct 31903331 CCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAACAG 31903390
Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396
| | ||| ||||| ||||| || || | || ||| ||||| || ||
Sbjct 31903391 GCGGTTCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACATCTCTGA 31903450
Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456
|||| |||||| || || || ||||| ||||||||| | || |||| || || ||
Sbjct 31903451 GTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTTGGAC 31903510
Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516
||||| || | | | ||| ||| || ||| || ||||| || || || || ||
Sbjct 31903511 TTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCGGCGAAGAA 31903570
Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAG 93576
|| | | || || || |||||||| ||| | || || ||||| | |
Sbjct 31903571 GGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTGACCGAC 31903630
Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636
|||| || |||||||| ||||| | |||||||| || ||||| ||||| ||||||||
Sbjct 31903631 ATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAATGAGGCTTCAGCTTTCTTGTACAT 31903690
Query 93637 ATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGATTAGGGTTATC 93690
||||| || | ||||||||||||| || || ||| || || | ||||| ||
Sbjct 31903691 CTCCCAGATTGATGGATATTGAATTGGGAACAT-ACAGAAGCGGTCTGGGTTTTC 31903744
>seq17
Length=14661173
Score = 170 bits (188), Expect = 2e-37
Identities = 576/883 (65%), Gaps = 18/883 (2%)
Strand=Plus/Minus
Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862
||||| || || || ||| |||| || |||||||| ||||| |||| |||||||||| |
Sbjct 8256975 TTTTGATACTCTCCTACTCTTTTCTCGAAGAAATTAGTCTTCCCTTGCAAAGATATCAAC 8256916
Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAA-CTCGTACAA 92919
| || | | || |||||| | || || || || | | ||| | | |||
Sbjct 8256915 TCCATCCAATCGAATGGATTAGCCACATTGTAC-ACCTTCCCGCACCCAAGCGCACCCAA 8256857
Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979
| ||||||||||| || || || |||||| |||||| || | ||||| |||| |
Sbjct 8256856 CAGCCTATCAGCTACGAACTCAATATACTGACTCATCAACTCCCCGTTCATCCCTACCA- 8256798
Query 92980 ACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGA 93038
||| || || || ||||| || || || |||| || | || || || |||| |
Sbjct 8256797 ACGCGCATGGCAGCGCGTCCACCACAAACTCCCTCTCAATATCCACTGCATCCTTCACTA 8256738
Query 93039 TTTCTATTACTCTACTATTTGGT--GGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096
| | | ||| | || | | | || || | || | |||| | | ||||||
Sbjct 8256737 TCCCCTTCACT-TGCTCCTCACTCAGCTTCTTCCTCAGCA-AGCTGTAGAGAAGGCACGC 8256680
Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156
|| || ||| | ||||| ||||| || |||||||| || || ||||| || ||
Sbjct 8256679 GAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTTGAAAAGGTTAACCCCGG 8256620
Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216
| || || || || || | ||||||||| | | |||||| || || |||||||| ||
Sbjct 8256619 CATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCC 8256560
Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276
||||||| ||||| || || | | || || ||| | || | | | |||||
Sbjct 8256559 TTCCACGCAAGCAAAAGCAACTAGCCTCTCCGCGAAACTCTCGC---TCCCGTCAATCCA 8256503
Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336
|| ||||| || || || | ||| || | ||||||||||| | ||| ||
Sbjct 8256502 CCGCAAGGCCCACCGTGCCTTCTTAGCCACACACGGCACCGTTTCGATAGCATGAAACAG 8256443
Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396
|| ||| || ||||| || || || || | | ||| ||||| || ||
Sbjct 8256442 ACGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTCTGA 8256383
Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456
|||| |||||| || || || ||||||||||| ||| | || |||| || || ||
Sbjct 8256382 GTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTGGAC 8256323
Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516
|||| || | | | |||||||||| ||| || ||||| || || || || ||
Sbjct 8256322 CTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGAAGAA 8256263
Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT--CGGAT 93574
|| | | ||| || || || ||||| || | || || ||||| | |||||
Sbjct 8256262 GGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGCGGAT 8256203
Query 93575 AGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTAC 93634
||| || |||||||| || || |||||||||| || || || ||||| ||||||
Sbjct 8256202 --ATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTAC 8256145
Query 93635 ATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAAC 93677
|| ||||| || | | || ||||| || || || ||| |||
Sbjct 8256144 ATCTCCCAGATTGATGGGTACTGAATGGGGAACAT-ACAGAAC 8256103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556843300649360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |