Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq11 93.3 4e-14 seq4 91.5 1e-13 seq17 84.2 2e-11 >seq6 Length=26894541 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || |||||||| | |||||||||||||| || | ||| || | Sbjct 10380422 ATGCAAATCTTCGTCAAAACCCTAACCGGCAAAACCATAACTCTTGAAGTCGAGAGTTCC 10380481 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | | ||||| || ||| ||||||||||| | || |||||| Sbjct 10380482 GATACTATTGACAACGTAAAGGCCAAGATTCAAGACAAAGAAGGTATCCCTCCGGATCAA 10380541 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| |||| ||| || |||||||| || ||| || || | || ||||||||| Sbjct 10380542 CAGAGGCTAATTTTTGCTGGGAAACAATTAGAGGATGGTAGGACCCTTGCGGATTATAAT 10380601 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || ||||| || || || || || | || | | || |||||||| Sbjct 10380602 ATCCAAAAGGAGTCCACCCTTCACCTTGTCCTCAGGCTTCGCGGTGG 10380648 >seq11 Length=18885544 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| || || | ||||| || || ||||| |||| ||| |||| Sbjct 145590 ATGCAGATTTTTGTGAAGACCCTAACCGGAAAGACTATTACGCTGGAGGTGGAGAGCAGC 145649 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG-ATCA 111305 || | | | | | || || || ||| ||||| || || | |||| || | || Sbjct 145650 GACACCATCGACAACGTCAAGGCGAAGATTCAGGACAAGGAGGG-GATCCCACCGGACCA 145708 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 |||||||| || | ||| || || || ||||| ||| | ||| |||| |||||||| Sbjct 145709 GCAAAGGCTGATCTTTGCTGGGAAGCAGTTGGAGGATGGAAGGACTTTGGCTGATTATAA 145768 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 ||| || ||||| ||||| || || | || || || || |||||||||| Sbjct 145769 TATCCAGAAAGAGTCTACTCTTCACCTTGTCTTACGCCTTCGCGGTGGCA 145818 >seq4 Length=23188140 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| |||||||| || || |||| || || || ||||| |||| ||| |||| Sbjct 1306854 ATGCAGATTTTTGTGAAGACCTTGACAGGGAAGACGATTACACTGGAGGTGGAGAGCAGC 1306795 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | | || || |||||| ||||| || || | || |||||| Sbjct 1306794 GACACCATTGACAACGTCAAGGCAAAAATCCAGGACAAGGAGGGAATCCCACCGGATCAA 1306735 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | || || | ||| || || || ||||| ||| | ||| |||| ||||||||| Sbjct 1306734 CAGCGTCTGATCTTTGCCGGGAAGCAGTTGGAGGATGGAAGAACCTTGGCGGATTATAAT 1306675 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGC 111414 || || ||||| || || || || | || |||||||| || |||||| Sbjct 1306674 ATCCAGAAAGAGTCGACCCTTCACCTTGTCTTGCGTCTCCGTGGTGGC 1306627 >seq17 Length=14661173 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 111280 GACAAAGAAGGCGTTCCCGTCG-ATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGA 111338 ||||| ||||| | |||| || | || |||||| | |||| ||| || ||||| | || Sbjct 1747302 GACAAGGAAGG-GATCCCACCGGACCAGCAAAGGTTGATTTTTGCTGGAAAACAGCTTGA 1747360 Query 111339 AGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTT 111398 |||| | || | || || |||||||| || || |||||||| || ||||| ||| | Sbjct 1747361 AGATGGAAGGACCCTTGCTGACTATAATATTCAGAAGGAATCTACTCTGCATTTGGTGCT 1747420 Query 111399 GCGTCTGCGCGGTGG 111413 |||||||||||||| Sbjct 1747421 CCGTCTGCGCGGTGG 1747435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423027038318800