Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq9 134 3e-26 seq1 131 3e-25 seq6 91.5 3e-13 seq18 87.8 4e-12 seq14 87.8 4e-12 seq10 87.8 4e-12 seq8 87.8 4e-12 seq7 87.8 4e-12 seq5 87.8 4e-12 seq3 87.8 4e-12 seq2 87.8 4e-12 >seq9 Length=12942059 Score = 134 bits (148), Expect = 3e-26 Identities = 208/295 (71%), Gaps = 8/295 (3%) Strand=Plus/Plus Query 218517 TGACTTCATCGACAAGGAGCTCAT--TCTTTTCTC--GCGGTATGATGTGGAGCGTTCTA 218572 ||||||||| |||||||||| || | |||||| |||| || | | | || | Sbjct 6178836 TGACTTCATTAACAAGGAGCTTATATTGTTTTCTATGGCGG----ATCTTCAAAGGTCCA 6178891 Query 218573 TTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCA 218632 | || |||| |||||||| ||||| ||| | |||||||| || | || | Sbjct 6178892 TACCTTCAATGGTTGATGGCCTGAAGCCTGGTCAGAGGAAGATCCTTTTCTGTTCTTTTA 6178951 Query 218633 AGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTT 218692 || |||| | || ||||| || || | ||||||||||||||||||||||| || Sbjct 6178952 AGAGGAATTTTGTCAAAGAAGCAAAAGTTTCCCAGTTTTCTGGTTATGTATCCGAGCATT 6179011 Query 218693 CTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACT 218752 ||| || ||||| || ||||||||||| ||| |||| | || |||||||| || | Sbjct 6179012 CTGCTTATCATCATGGAGAGCAGAGTCTTGCCGGTACCATCATTGGAATGGCACAAGATT 6179071 Query 218753 ATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCG 218807 ||| |||||||||||||| ||| | || | || || ||||| ||||| |||| Sbjct 6179072 TTGTTGGCAGTAACAACATTAACCTTCTTCAGCCAAATGGTCAATTTGGCACTCG 6179126 >seq1 Length=48367220 Score = 131 bits (144), Expect = 3e-25 Identities = 161/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 218582 TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACC 218641 |||| |||||||| ||||| ||| | |||||||| || | || ||| |||| Sbjct 26068049 TGGTTGATGGCCTGAAGCCTGGTCAGAGGAAGATCCTTTTCTGTTCTTTTAAGAGGAATT 26068108 Query 218642 TGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACC 218701 | ||| ||||| || | | ||||||||||||||||||||||| ||||| || | Sbjct 26068109 TTGTTAAAGAAGCGAAAATTTCCCAGTTTTCTGGTTATGTATCCGAGCATTCTGCTTATC 26068168 Query 218702 ATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCA 218761 |||| |||||||||||||| || | || | || ||||||||||| | ||| |||| Sbjct 26068169 ATCATGGTGAGCAGAGTCTTGCCAGTACAATCATTGGAATGGCACAGGATTTTGTTGGCA 26068228 Query 218762 GTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 | |||||||| ||| | || || || || ||||| ||||| Sbjct 26068229 GCAACAACATTAACCTTCTTCTGCCAAATGGTCAATTTGG 26068268 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 6118285 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6118226 Query 142563 CCCCAC 142568 |||||| Sbjct 6118225 CCCCAC 6118220 >seq6 Length=26894541 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142496 GTGAGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGG 142555 || || ||||||| ||||||||| |||||||||| || ||||||| || |||||||||| Sbjct 6212961 GTCAGGTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGG 6213020 Query 142556 GTTCGAGCCCCAC 142568 ||||||||||||| Sbjct 6213021 GTTCGAGCCCCAC 6213033 >seq18 Length=14966190 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 10041021 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10040962 Query 142563 CCCCAC 142568 |||||| Sbjct 10040961 CCCCAC 10040956 >seq14 Length=17716633 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 4939828 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4939769 Query 142563 CCCCAC 142568 |||||| Sbjct 4939768 CCCCAC 4939763 >seq10 Length=21538349 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 8067010 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 8066951 Query 142563 CCCCAC 142568 |||||| Sbjct 8066950 CCCCAC 8066945 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 17194818 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 17194877 Query 142563 CCCCAC 142568 |||||| Sbjct 17194878 CCCCAC 17194883 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 20045985 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 20046044 Query 142563 CCCCAC 142568 |||||| Sbjct 20046045 CCCCAC 20046050 >seq8 Length=18835763 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 3242476 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3242535 Query 142563 CCCCAC 142568 |||||| Sbjct 3242536 CCCCAC 3242541 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 4420227 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4420168 Query 142563 CCCCAC 142568 |||||| Sbjct 4420167 CCCCAC 4420162 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 11911866 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 11911925 Query 142563 CCCCAC 142568 |||||| Sbjct 11911926 CCCCAC 11911931 >seq7 Length=15101417 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 5687282 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5687341 Query 142563 CCCCAC 142568 |||||| Sbjct 5687342 CCCCAC 5687347 >seq5 Length=25802683 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 6418393 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6418452 Query 142563 CCCCAC 142568 |||||| Sbjct 6418453 CCCCAC 6418458 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 14038166 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 14038225 Query 142563 CCCCAC 142568 |||||| Sbjct 14038226 CCCCAC 14038231 >seq3 Length=20216275 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 15882030 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 15881971 Query 142563 CCCCAC 142568 |||||| Sbjct 15881970 CCCCAC 15881965 >seq2 Length=23562801 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 6863794 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6863853 Query 142563 CCCCAC 142568 |||||| Sbjct 6863854 CCCCAC 6863859 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 11030591 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 11030532 Query 142563 CCCCAC 142568 |||||| Sbjct 11030531 CCCCAC 11030526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027803692734274