Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20trichocarpa_20[refseq_20GCF_5F000002775.3_202013-10-18] 2,514 sequences; 417,286,671 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq17 102 6e-17 seq1 102 6e-17 seq7 98.7 7e-16 seq16 96.9 2e-15 seq6 89.7 4e-13 >seq17 Length=14661173 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || || || || ||||| ||| |||| ||| | | Sbjct 4943049 ATGCAAATTTTTGTGAAGACTTTGACTGGGAAGACCATCACCTTGGAGGTGGAGAGCTCC 4942990 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||||| ||||||||||| | ||| | ||||| Sbjct 4942989 GACACCATTGATAATGTCAAGGCTAAAATCCAAGATAAAGAGGGCATCCCTCCAGACCAA 4942930 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||||||||| ||||| || ||| ||| | || |||||||| Sbjct 4942929 CAGAGGCTCATCTTTGCTGGCAAGCAACTTGAGGATGGGCGCACTCTCGCTGATTACAAC 4942870 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || |||||||| || || |||||| |||| Sbjct 4942869 ATCCAGAAGGAGTCCACCCTTCATTTGGT 4942841 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || || || ||||| ||| |||| ||| | | Sbjct 4943277 ATGCAGATCTTTGTCAAGACTTTGACTGGGAAGACCATCACCTTGGAGGTGGAGAGCTCC 4943218 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||||| ||||| ||||| | ||| | ||||| Sbjct 4943217 GACACCATTGATAATGTCAAGGCCAAAATCCAGGATAAGGAGGGCATCCCTCCAGACCAA 4943158 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||||||||| || || || ||| | ||| | || || ||||| Sbjct 4943157 CAGAGGCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGACGTACTCTAGCTGACTACAAC 4943098 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||||||||||| || ||||| |||| Sbjct 4943097 ATCCAGAAGGAATCCACCCTTCACTTGGT 4943069 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || || || || ||||| |||| |||| | || Sbjct 1747437 ATGCAGATTTTTGTCAAGACCTTGACAGGAAAGACAATTACTTTGGAGGTGGAAAGCTCA 1747496 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||| || ||||| ||||| | || | | || Sbjct 1747497 GATACCATTGATAATGTCAAGACAAAGATCCAAGATAAGGAGGGAATTCCACCAGATCAG 1747556 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||||||| |||||||| |||||| || | || || || ||| Sbjct 1747557 CAGAGGCTCATCTTTGCTGGGAAACAACTTGAAGATGGTCGCACCCTTGCAGACTATAAT 1747616 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||||||||| ||||| || ||||| | ||| | || || || Sbjct 1747617 ATCCAGAAGGAATCAACTCTGCACTTGGTACTCCGTCTGCGTGGTGG 1747663 >seq1 Length=48367220 Score = 102 bits (112), Expect = 6e-17 Identities = 163/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || ||| | || || |||||||||||| ||||| || | | Sbjct 25979872 ATGCAGATTTTTGTCAAGACACTCACTGGAAAAACCATTACCTTGGAAGTCGAGAGCTCT 25979813 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| |||||| ||||| |||||| | || | |||| Sbjct 25979812 GATACAATTGACAATGTCAAGGCCAAAATTCAGGATAAGGAGGGTATCCCACCAGACCAG 25979753 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | ||||||||||| || || || || ||| | |||| |||| ||||||||| Sbjct 25979752 CAAAGGTTGATCTTTGCTGGAAAGCAGCTGGAGGATGGACGAACTTTGGCAGATTACAAT 25979693 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAA 22067 || |||||||| || ||||| || | || | || | || || || |||||| Sbjct 25979692 ATCCAGAAGGAGTCGACTCTGCACCTTGTCCTTCGCCTTCGTGGTGGTTATTAA 25979639 >seq7 Length=15101417 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || || || || || ||||||||| |||| || | | Sbjct 1458664 ATGCAGATTTTCGTGAAGACTTTGACTGGGAAGACCATTACCTTGGAGGTAGAGAGCTCT 1458605 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| |||||| || |||||||| | || | | ||| Sbjct 1458604 GACACCATCGATAATGTCAAGGCAAAAATCCAGGACAAAGAGGGCATCCCCCCAGATCAA 1458545 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||||||||||||||| || ||||| ||| ||| |||| || ||||| Sbjct 1458544 CAGAGGCTTATCTTTGCTGGCAAGCAGCTAGAGGATGGGCGCACTCTGGCTGACTACAAC 1458485 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| ||||||||||| |||| | || || || ||||| Sbjct 1458484 ATCCAGAAGGAGTCTACTCTTCACTTGGTGCTGCGCTTGCGTGGAGG 1458438 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || ||| | || || || ||||| ||| |||| ||| | | Sbjct 1458436 ATGCAGATCTTTGTCAAGACACTCACCGGGAAGACCATCACCTTGGAGGTGGAGAGCTCT 1458377 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||||| ||||| ||||| | ||| | ||||| Sbjct 1458376 GACACCATTGATAATGTGAAGGCTAAAATCCAAGATAAGGAGGGCATCCCTCCAGACCAA 1458317 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||||||||| || ||||| || ||| ||| | || |||||||| Sbjct 1458316 CAGAGACTCATCTTTGCTGGGAAGCAACTTGAGGATGGGCGCACTCTTGCTGATTACAAC 1458257 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||| || || || || |||| Sbjct 1458256 ATTCAGAAGGAGTCCACCCTCCACTTGGT 1458228 >seq16 Length=14134809 Score = 96.9 bits (106), Expect = 2e-15 Identities = 94/120 (78%), Gaps = 1/120 (1%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| || |||||||| || || || ||||||||| || || | || ||||| Sbjct 6733651 CAGCAGAGGCTAATCTTTGCAGGGAAGCAGCTAGAAGATGGAAGGACCCTTGCTGATTAT 6733592 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGA-GGATATTAATA 22069 |||||||| ||||| |||||||||||| |||| | |||||| ||||| ||||| |||| Sbjct 6733591 AATATTCAAAAGGAGTCTACTCTTCATCTGGTGCTGCGTTTAAGAGGAGGGATACAAATA 6733532 >seq6 Length=26894541 Score = 89.7 bits (98), Expect = 4e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||||| ||||| |||||||| || ||| |||| ||| | ||| | || |||| Sbjct 10380993 ACCAGCAGAGGCTTATATTTGCTGGGAAGCAATTAGAGGATGGGAGGACTCTTGCGGATT 10381052 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||||| |||||||| ||| | || | ||| | ||||| || Sbjct 10381053 ACAATATTCAGAAGGAGTCTACTCTCCATCTCGTGCTCCGTCTTCGAGGTGG 10381104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358113827279956